Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_4166

Experiment: m.b. Chlorite 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_4165 and Dshi_4166 are separated by 96 nucleotidesDshi_4166 and Dshi_4167 overlap by 4 nucleotides Dshi_4165: Dshi_4165 - NMT1/THI5 like domain protein (RefSeq), at 13,135 to 14,130 _4165 Dshi_4166: Dshi_4166 - hypothetical protein (RefSeq), at 14,227 to 15,177 _4166 Dshi_4167: Dshi_4167 - sulfatase (RefSeq), at 15,174 to 16,799 _4167 Position (kb) 14 15 16Strain fitness (log2 ratio) -1 0 1at 13.272 kb on + strand, within Dshi_4165at 13.272 kb on + strand, within Dshi_4165at 13.525 kb on + strand, within Dshi_4165at 13.611 kb on + strand, within Dshi_4165at 13.619 kb on - strand, within Dshi_4165at 13.658 kb on - strand, within Dshi_4165at 13.659 kb on + strand, within Dshi_4165at 13.701 kb on + strand, within Dshi_4165at 13.916 kb on + strand, within Dshi_4165at 14.188 kb on - strandat 14.316 kb on - strandat 14.524 kb on + strand, within Dshi_4166at 14.744 kb on + strand, within Dshi_4166at 14.907 kb on - strand, within Dshi_4166at 15.615 kb on + strand, within Dshi_4167at 15.863 kb on - strand, within Dshi_4167

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
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13,272 + Dshi_4165 0.14 -0.4
13,272 + Dshi_4165 0.14 +0.6
13,525 + Dshi_4165 0.39 +0.8
13,611 + Dshi_4165 0.48 +0.2
13,619 - Dshi_4165 0.49 -0.1
13,658 - Dshi_4165 0.53 +0.9
13,659 + Dshi_4165 0.53 -1.1
13,701 + Dshi_4165 0.57 +0.4
13,916 + Dshi_4165 0.78 +1.2
14,188 - +0.1
14,316 - -0.3
14,524 + Dshi_4166 0.31 +1.5
14,744 + Dshi_4166 0.54 -1.1
14,907 - Dshi_4166 0.72 -0.7
15,615 + Dshi_4167 0.27 +1.7
15,863 - Dshi_4167 0.42 -0.1

Or see this region's nucleotide sequence