Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3903

Experiment: m.b. Chlorite 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3902 and Dshi_3903 are separated by 12 nucleotidesDshi_3903 and Dshi_3904 are separated by 112 nucleotides Dshi_3902: Dshi_3902 - efflux transporter, RND family, MFP subunit (RefSeq), at 128,472 to 129,650 _3902 Dshi_3903: Dshi_3903 - short-chain dehydrogenase/reductase SDR (RefSeq), at 129,663 to 130,460 _3903 Dshi_3904: Dshi_3904 - SSS sodium solute transporter superfamily (RefSeq), at 130,573 to 132,153 _3904 Position (kb) 129 130 131Strain fitness (log2 ratio) -2 -1 0 1 2at 128.717 kb on + strand, within Dshi_3902at 128.718 kb on + strand, within Dshi_3902at 128.846 kb on - strand, within Dshi_3902at 128.908 kb on - strand, within Dshi_3902at 129.109 kb on + strand, within Dshi_3902at 129.151 kb on + strand, within Dshi_3902at 129.156 kb on + strand, within Dshi_3902at 129.192 kb on + strand, within Dshi_3902at 129.193 kb on + strand, within Dshi_3902at 129.201 kb on - strand, within Dshi_3902at 129.267 kb on - strand, within Dshi_3902at 129.273 kb on - strand, within Dshi_3902at 129.317 kb on + strand, within Dshi_3902at 129.325 kb on - strand, within Dshi_3902at 129.347 kb on - strand, within Dshi_3902at 129.430 kb on - strand, within Dshi_3902at 129.487 kb on - strand, within Dshi_3902at 129.546 kb on - strandat 129.573 kb on + strandat 129.625 kb on + strandat 129.724 kb on - strandat 129.724 kb on - strandat 129.724 kb on - strandat 129.739 kb on - strandat 129.822 kb on + strand, within Dshi_3903at 129.899 kb on + strand, within Dshi_3903at 129.899 kb on + strand, within Dshi_3903at 129.911 kb on + strand, within Dshi_3903at 129.927 kb on - strand, within Dshi_3903at 130.004 kb on - strand, within Dshi_3903at 130.028 kb on - strand, within Dshi_3903at 130.030 kb on + strand, within Dshi_3903at 130.054 kb on - strand, within Dshi_3903at 130.085 kb on + strand, within Dshi_3903at 130.181 kb on - strand, within Dshi_3903at 130.240 kb on + strand, within Dshi_3903at 130.244 kb on + strand, within Dshi_3903at 130.438 kb on - strandat 130.490 kb on + strandat 130.521 kb on + strandat 130.565 kb on + strandat 130.635 kb on - strandat 130.689 kb on + strandat 130.695 kb on + strandat 130.710 kb on + strandat 130.710 kb on + strandat 130.731 kb on + strand, within Dshi_3904at 130.830 kb on + strand, within Dshi_3904at 130.837 kb on + strand, within Dshi_3904at 130.858 kb on - strand, within Dshi_3904at 130.862 kb on + strand, within Dshi_3904at 130.908 kb on + strand, within Dshi_3904at 130.916 kb on - strand, within Dshi_3904at 130.951 kb on - strand, within Dshi_3904at 131.057 kb on + strand, within Dshi_3904at 131.065 kb on - strand, within Dshi_3904at 131.071 kb on - strand, within Dshi_3904at 131.122 kb on + strand, within Dshi_3904at 131.130 kb on - strand, within Dshi_3904at 131.141 kb on - strand, within Dshi_3904at 131.151 kb on - strand, within Dshi_3904at 131.151 kb on - strand, within Dshi_3904at 131.187 kb on + strand, within Dshi_3904at 131.195 kb on - strand, within Dshi_3904at 131.195 kb on - strand, within Dshi_3904at 131.237 kb on - strand, within Dshi_3904at 131.252 kb on + strand, within Dshi_3904at 131.260 kb on - strand, within Dshi_3904at 131.288 kb on - strand, within Dshi_3904at 131.303 kb on + strand, within Dshi_3904at 131.327 kb on + strand, within Dshi_3904at 131.327 kb on + strand, within Dshi_3904at 131.327 kb on - strand, within Dshi_3904at 131.423 kb on + strand, within Dshi_3904at 131.423 kb on + strand, within Dshi_3904at 131.431 kb on - strand, within Dshi_3904at 131.431 kb on - strand, within Dshi_3904at 131.433 kb on + strand, within Dshi_3904at 131.433 kb on + strand, within Dshi_3904at 131.433 kb on + strand, within Dshi_3904at 131.436 kb on - strand, within Dshi_3904at 131.438 kb on + strand, within Dshi_3904at 131.441 kb on - strand, within Dshi_3904at 131.441 kb on - strand, within Dshi_3904at 131.441 kb on - strand, within Dshi_3904at 131.441 kb on - strand, within Dshi_3904at 131.443 kb on + strand, within Dshi_3904at 131.446 kb on - strand, within Dshi_3904

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
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128,717 + Dshi_3902 0.21 +0.2
128,718 + Dshi_3902 0.21 -0.6
128,846 - Dshi_3902 0.32 +0.8
128,908 - Dshi_3902 0.37 -0.4
129,109 + Dshi_3902 0.54 +0.2
129,151 + Dshi_3902 0.58 -0.5
129,156 + Dshi_3902 0.58 +0.0
129,192 + Dshi_3902 0.61 +0.1
129,193 + Dshi_3902 0.61 -0.4
129,201 - Dshi_3902 0.62 -0.2
129,267 - Dshi_3902 0.67 +0.6
129,273 - Dshi_3902 0.68 +0.3
129,317 + Dshi_3902 0.72 +0.3
129,325 - Dshi_3902 0.72 +0.5
129,347 - Dshi_3902 0.74 +2.2
129,430 - Dshi_3902 0.81 +0.0
129,487 - Dshi_3902 0.86 +0.0
129,546 - -0.3
129,573 + +1.3
129,625 + +0.3
129,724 - +0.5
129,724 - -2.3
129,724 - +0.4
129,739 - -1.6
129,822 + Dshi_3903 0.20 -0.3
129,899 + Dshi_3903 0.30 -0.6
129,899 + Dshi_3903 0.30 -0.5
129,911 + Dshi_3903 0.31 +0.3
129,927 - Dshi_3903 0.33 -0.6
130,004 - Dshi_3903 0.43 +0.1
130,028 - Dshi_3903 0.46 +0.6
130,030 + Dshi_3903 0.46 -0.2
130,054 - Dshi_3903 0.49 -0.2
130,085 + Dshi_3903 0.53 +0.1
130,181 - Dshi_3903 0.65 +0.3
130,240 + Dshi_3903 0.72 +0.3
130,244 + Dshi_3903 0.73 -1.6
130,438 - +0.8
130,490 + -0.4
130,521 + +1.2
130,565 + +0.3
130,635 - -1.0
130,689 + +0.3
130,695 + +0.2
130,710 + -0.1
130,710 + -0.4
130,731 + Dshi_3904 0.10 -0.1
130,830 + Dshi_3904 0.16 +0.6
130,837 + Dshi_3904 0.17 +0.4
130,858 - Dshi_3904 0.18 +0.4
130,862 + Dshi_3904 0.18 -0.8
130,908 + Dshi_3904 0.21 +1.0
130,916 - Dshi_3904 0.22 +1.4
130,951 - Dshi_3904 0.24 +0.6
131,057 + Dshi_3904 0.31 +0.9
131,065 - Dshi_3904 0.31 +0.4
131,071 - Dshi_3904 0.31 -1.3
131,122 + Dshi_3904 0.35 +0.8
131,130 - Dshi_3904 0.35 +0.5
131,141 - Dshi_3904 0.36 +0.9
131,151 - Dshi_3904 0.37 -0.6
131,151 - Dshi_3904 0.37 +0.7
131,187 + Dshi_3904 0.39 -0.2
131,195 - Dshi_3904 0.39 +0.3
131,195 - Dshi_3904 0.39 +0.4
131,237 - Dshi_3904 0.42 -0.6
131,252 + Dshi_3904 0.43 +0.3
131,260 - Dshi_3904 0.43 +0.2
131,288 - Dshi_3904 0.45 +0.7
131,303 + Dshi_3904 0.46 +0.5
131,327 + Dshi_3904 0.48 +0.8
131,327 + Dshi_3904 0.48 -0.5
131,327 - Dshi_3904 0.48 -0.7
131,423 + Dshi_3904 0.54 +0.7
131,423 + Dshi_3904 0.54 +0.8
131,431 - Dshi_3904 0.54 +0.0
131,431 - Dshi_3904 0.54 +0.5
131,433 + Dshi_3904 0.54 -0.5
131,433 + Dshi_3904 0.54 +0.3
131,433 + Dshi_3904 0.54 +0.0
131,436 - Dshi_3904 0.55 +2.5
131,438 + Dshi_3904 0.55 +1.0
131,441 - Dshi_3904 0.55 +0.1
131,441 - Dshi_3904 0.55 -0.1
131,441 - Dshi_3904 0.55 -2.6
131,441 - Dshi_3904 0.55 -0.4
131,443 + Dshi_3904 0.55 +1.6
131,446 - Dshi_3904 0.55 -0.2

Or see this region's nucleotide sequence