Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3842

Experiment: m.b. Chlorite 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3841 and Dshi_3842 are separated by 99 nucleotidesDshi_3842 and Dshi_3843 are separated by 142 nucleotidesDshi_3843 and Dshi_3844 are separated by 29 nucleotides Dshi_3841: Dshi_3841 - Glutamate dehydrogenase (NADP(+)) (RefSeq), at 50,414 to 51,757 _3841 Dshi_3842: Dshi_3842 - protein of unknown function DUF1328 (RefSeq), at 51,857 to 52,027 _3842 Dshi_3843: Dshi_3843 - hypothetical protein (RefSeq), at 52,170 to 52,586 _3843 Dshi_3844: Dshi_3844 - cyclic nucleotide-binding protein (RefSeq), at 52,616 to 53,344 _3844 Position (kb) 51 52 53Strain fitness (log2 ratio) -1 0 1 2at 50.877 kb on + strand, within Dshi_3841at 50.885 kb on - strand, within Dshi_3841at 50.885 kb on - strand, within Dshi_3841at 50.975 kb on + strand, within Dshi_3841at 50.982 kb on - strand, within Dshi_3841at 50.983 kb on - strand, within Dshi_3841at 50.988 kb on - strand, within Dshi_3841at 51.243 kb on + strand, within Dshi_3841at 51.254 kb on - strand, within Dshi_3841at 51.381 kb on + strand, within Dshi_3841at 51.381 kb on + strand, within Dshi_3841at 51.381 kb on + strand, within Dshi_3841at 51.485 kb on - strand, within Dshi_3841at 51.486 kb on + strand, within Dshi_3841at 51.504 kb on - strand, within Dshi_3841at 51.550 kb on + strand, within Dshi_3841at 51.593 kb on - strand, within Dshi_3841at 51.598 kb on - strand, within Dshi_3841at 51.626 kb on - strandat 51.632 kb on - strandat 51.644 kb on + strandat 51.765 kb on + strandat 51.765 kb on + strandat 51.839 kb on - strandat 51.855 kb on + strandat 51.855 kb on + strandat 51.855 kb on + strandat 51.897 kb on - strand, within Dshi_3842at 51.977 kb on - strand, within Dshi_3842at 52.171 kb on - strandat 52.176 kb on - strandat 52.195 kb on + strandat 52.197 kb on + strandat 52.222 kb on + strand, within Dshi_3843at 52.242 kb on + strand, within Dshi_3843at 52.333 kb on + strand, within Dshi_3843at 52.337 kb on + strand, within Dshi_3843at 52.485 kb on + strand, within Dshi_3843at 52.493 kb on - strand, within Dshi_3843at 52.562 kb on - strandat 52.607 kb on - strandat 52.686 kb on - strandat 52.720 kb on - strand, within Dshi_3844at 52.771 kb on + strand, within Dshi_3844at 52.771 kb on + strand, within Dshi_3844at 52.771 kb on + strand, within Dshi_3844at 52.779 kb on - strand, within Dshi_3844at 52.779 kb on - strand, within Dshi_3844at 52.779 kb on - strand, within Dshi_3844at 52.779 kb on - strand, within Dshi_3844at 52.779 kb on - strand, within Dshi_3844at 52.779 kb on - strand, within Dshi_3844at 52.784 kb on - strand, within Dshi_3844at 52.791 kb on + strand, within Dshi_3844at 52.796 kb on + strand, within Dshi_3844at 52.822 kb on - strand, within Dshi_3844at 52.822 kb on - strand, within Dshi_3844at 52.822 kb on - strand, within Dshi_3844at 52.822 kb on - strand, within Dshi_3844at 52.832 kb on + strand, within Dshi_3844at 52.860 kb on - strand, within Dshi_3844at 52.869 kb on + strand, within Dshi_3844at 52.871 kb on + strand, within Dshi_3844at 52.930 kb on - strand, within Dshi_3844at 52.962 kb on - strand, within Dshi_3844at 52.962 kb on - strand, within Dshi_3844at 52.962 kb on - strand, within Dshi_3844at 52.966 kb on + strand, within Dshi_3844at 52.974 kb on - strand, within Dshi_3844at 52.989 kb on + strand, within Dshi_3844at 53.007 kb on - strand, within Dshi_3844

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
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50,877 + Dshi_3841 0.34 +0.7
50,885 - Dshi_3841 0.35 +0.6
50,885 - Dshi_3841 0.35 +0.4
50,975 + Dshi_3841 0.42 +0.4
50,982 - Dshi_3841 0.42 +0.6
50,983 - Dshi_3841 0.42 +0.1
50,988 - Dshi_3841 0.43 +0.3
51,243 + Dshi_3841 0.62 -0.6
51,254 - Dshi_3841 0.62 +0.0
51,381 + Dshi_3841 0.72 +0.0
51,381 + Dshi_3841 0.72 +2.0
51,381 + Dshi_3841 0.72 -0.2
51,485 - Dshi_3841 0.80 -0.3
51,486 + Dshi_3841 0.80 -0.8
51,504 - Dshi_3841 0.81 +0.8
51,550 + Dshi_3841 0.85 -0.2
51,593 - Dshi_3841 0.88 -1.0
51,598 - Dshi_3841 0.88 +0.8
51,626 - +0.4
51,632 - +1.3
51,644 + +0.0
51,765 + -0.7
51,765 + -0.5
51,839 - +0.5
51,855 + +0.2
51,855 + -0.2
51,855 + +1.6
51,897 - Dshi_3842 0.23 +0.9
51,977 - Dshi_3842 0.70 +0.4
52,171 - +0.2
52,176 - -0.5
52,195 + -1.2
52,197 + -0.6
52,222 + Dshi_3843 0.12 +0.4
52,242 + Dshi_3843 0.17 +0.5
52,333 + Dshi_3843 0.39 -0.6
52,337 + Dshi_3843 0.40 -0.6
52,485 + Dshi_3843 0.76 -1.0
52,493 - Dshi_3843 0.77 +0.6
52,562 - +0.0
52,607 - +0.1
52,686 - +1.1
52,720 - Dshi_3844 0.14 +0.3
52,771 + Dshi_3844 0.21 -0.4
52,771 + Dshi_3844 0.21 +0.0
52,771 + Dshi_3844 0.21 +1.0
52,779 - Dshi_3844 0.22 +0.4
52,779 - Dshi_3844 0.22 +0.5
52,779 - Dshi_3844 0.22 -0.0
52,779 - Dshi_3844 0.22 -0.3
52,779 - Dshi_3844 0.22 +1.2
52,779 - Dshi_3844 0.22 -0.1
52,784 - Dshi_3844 0.23 -1.3
52,791 + Dshi_3844 0.24 +0.2
52,796 + Dshi_3844 0.25 -0.0
52,822 - Dshi_3844 0.28 -0.5
52,822 - Dshi_3844 0.28 +0.3
52,822 - Dshi_3844 0.28 +0.1
52,822 - Dshi_3844 0.28 +0.4
52,832 + Dshi_3844 0.30 -0.2
52,860 - Dshi_3844 0.33 +0.1
52,869 + Dshi_3844 0.35 +0.2
52,871 + Dshi_3844 0.35 -0.8
52,930 - Dshi_3844 0.43 +0.4
52,962 - Dshi_3844 0.47 +1.0
52,962 - Dshi_3844 0.47 +0.4
52,962 - Dshi_3844 0.47 -0.2
52,966 + Dshi_3844 0.48 +0.7
52,974 - Dshi_3844 0.49 -0.5
52,989 + Dshi_3844 0.51 +0.1
53,007 - Dshi_3844 0.54 -0.5

Or see this region's nucleotide sequence