Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3726

Experiment: m.b. Chlorite 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3724 and Dshi_3725 are separated by 20 nucleotidesDshi_3725 and Dshi_3726 overlap by 8 nucleotidesDshi_3726 and Dshi_3727 overlap by 4 nucleotidesDshi_3727 and Dshi_3728 overlap by 8 nucleotides Dshi_3724: Dshi_3724 - Extracellular ligand-binding receptor (RefSeq), at 131,326 to 132,480 _3724 Dshi_3725: Dshi_3725 - inner-membrane translocator (RefSeq), at 132,501 to 133,385 _3725 Dshi_3726: Dshi_3726 - inner-membrane translocator (RefSeq), at 133,378 to 134,406 _3726 Dshi_3727: Dshi_3727 - ABC transporter related (RefSeq), at 134,403 to 135,143 _3727 Dshi_3728: Dshi_3728 - ABC transporter related (RefSeq), at 135,136 to 135,846 _3728 Position (kb) 133 134 135Strain fitness (log2 ratio) -1 0 1 2at 132.392 kb on - strandat 132.402 kb on - strandat 132.406 kb on - strandat 132.408 kb on - strandat 132.423 kb on + strandat 132.431 kb on - strandat 132.464 kb on + strandat 132.466 kb on + strandat 132.473 kb on + strandat 132.474 kb on + strandat 132.474 kb on + strandat 132.474 kb on + strandat 132.474 kb on + strandat 132.474 kb on + strandat 132.482 kb on - strandat 132.482 kb on - strandat 132.482 kb on - strandat 132.485 kb on + strandat 132.515 kb on - strandat 132.547 kb on + strandat 132.585 kb on + strandat 132.630 kb on - strand, within Dshi_3725at 132.765 kb on - strand, within Dshi_3725at 132.779 kb on - strand, within Dshi_3725at 132.781 kb on - strand, within Dshi_3725at 132.794 kb on + strand, within Dshi_3725at 132.794 kb on + strand, within Dshi_3725at 132.794 kb on - strandat 132.798 kb on - strand, within Dshi_3725at 132.806 kb on + strand, within Dshi_3725at 132.814 kb on + strand, within Dshi_3725at 132.822 kb on - strand, within Dshi_3725at 132.822 kb on - strand, within Dshi_3725at 132.905 kb on - strand, within Dshi_3725at 132.906 kb on + strand, within Dshi_3725at 132.931 kb on + strand, within Dshi_3725at 132.935 kb on + strand, within Dshi_3725at 132.941 kb on + strand, within Dshi_3725at 132.972 kb on - strand, within Dshi_3725at 133.048 kb on - strand, within Dshi_3725at 133.054 kb on + strand, within Dshi_3725at 133.054 kb on + strand, within Dshi_3725at 133.054 kb on + strand, within Dshi_3725at 133.062 kb on - strand, within Dshi_3725at 133.076 kb on + strand, within Dshi_3725at 133.079 kb on - strand, within Dshi_3725at 133.084 kb on - strand, within Dshi_3725at 133.110 kb on - strand, within Dshi_3725at 133.115 kb on - strand, within Dshi_3725at 133.116 kb on + strand, within Dshi_3725at 133.137 kb on + strand, within Dshi_3725at 133.218 kb on + strand, within Dshi_3725at 133.218 kb on + strand, within Dshi_3725at 133.223 kb on + strand, within Dshi_3725at 133.223 kb on + strand, within Dshi_3725at 133.300 kb on + strandat 133.303 kb on - strandat 133.351 kb on + strandat 133.361 kb on + strandat 133.361 kb on + strandat 133.377 kb on - strandat 133.378 kb on + strandat 133.556 kb on + strand, within Dshi_3726at 133.574 kb on + strand, within Dshi_3726at 133.582 kb on - strand, within Dshi_3726at 133.582 kb on - strand, within Dshi_3726at 133.582 kb on - strand, within Dshi_3726at 133.649 kb on + strand, within Dshi_3726at 133.678 kb on - strand, within Dshi_3726at 133.691 kb on - strand, within Dshi_3726at 133.904 kb on - strand, within Dshi_3726at 133.915 kb on + strand, within Dshi_3726at 133.923 kb on - strand, within Dshi_3726at 133.923 kb on - strand, within Dshi_3726at 133.939 kb on + strand, within Dshi_3726at 133.958 kb on + strand, within Dshi_3726at 133.958 kb on + strand, within Dshi_3726at 133.968 kb on - strand, within Dshi_3726at 134.020 kb on - strand, within Dshi_3726at 134.037 kb on - strand, within Dshi_3726at 134.047 kb on - strand, within Dshi_3726at 134.050 kb on - strand, within Dshi_3726at 134.084 kb on + strand, within Dshi_3726at 134.084 kb on + strand, within Dshi_3726at 134.087 kb on - strand, within Dshi_3726at 134.087 kb on - strand, within Dshi_3726at 134.089 kb on + strand, within Dshi_3726at 134.092 kb on - strand, within Dshi_3726at 134.092 kb on - strand, within Dshi_3726at 134.099 kb on + strand, within Dshi_3726at 134.139 kb on - strand, within Dshi_3726at 134.178 kb on - strand, within Dshi_3726at 134.223 kb on - strand, within Dshi_3726at 134.238 kb on - strand, within Dshi_3726at 134.261 kb on + strand, within Dshi_3726at 134.266 kb on + strand, within Dshi_3726at 134.269 kb on - strand, within Dshi_3726at 134.272 kb on + strand, within Dshi_3726at 134.272 kb on + strand, within Dshi_3726at 134.274 kb on - strand, within Dshi_3726at 134.301 kb on - strand, within Dshi_3726at 134.351 kb on + strandat 134.351 kb on + strandat 134.351 kb on + strandat 134.399 kb on + strandat 134.430 kb on - strandat 134.448 kb on - strandat 134.458 kb on - strandat 134.502 kb on + strand, within Dshi_3727at 134.514 kb on - strand, within Dshi_3727at 134.530 kb on + strand, within Dshi_3727at 134.538 kb on - strand, within Dshi_3727at 134.575 kb on + strand, within Dshi_3727at 134.589 kb on - strand, within Dshi_3727at 134.604 kb on - strand, within Dshi_3727at 134.648 kb on - strand, within Dshi_3727at 134.675 kb on - strand, within Dshi_3727at 134.685 kb on + strand, within Dshi_3727at 134.699 kb on + strand, within Dshi_3727at 134.749 kb on - strand, within Dshi_3727at 134.889 kb on + strand, within Dshi_3727at 134.901 kb on + strand, within Dshi_3727at 134.916 kb on - strand, within Dshi_3727at 134.917 kb on + strand, within Dshi_3727at 134.949 kb on + strand, within Dshi_3727at 134.982 kb on - strand, within Dshi_3727at 135.033 kb on + strand, within Dshi_3727at 135.096 kb on - strandat 135.138 kb on + strandat 135.146 kb on - strandat 135.151 kb on - strandat 135.156 kb on - strandat 135.156 kb on - strandat 135.181 kb on + strandat 135.181 kb on + strandat 135.181 kb on + strandat 135.184 kb on - strandat 135.189 kb on - strandat 135.190 kb on - strandat 135.194 kb on + strandat 135.199 kb on - strandat 135.204 kb on - strandat 135.235 kb on - strand, within Dshi_3728at 135.261 kb on + strand, within Dshi_3728at 135.297 kb on + strand, within Dshi_3728at 135.298 kb on + strand, within Dshi_3728at 135.305 kb on - strand, within Dshi_3728at 135.376 kb on + strand, within Dshi_3728

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
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132,392 - -0.3
132,402 - +0.9
132,406 - +1.0
132,408 - +0.0
132,423 + -0.1
132,431 - +0.5
132,464 + +0.6
132,466 + -0.5
132,473 + +0.4
132,474 + -0.1
132,474 + -1.3
132,474 + +0.0
132,474 + -0.2
132,474 + -0.2
132,482 - +0.0
132,482 - -0.1
132,482 - -0.1
132,485 + +0.0
132,515 - +0.4
132,547 + +0.0
132,585 + -0.1
132,630 - Dshi_3725 0.15 -0.0
132,765 - Dshi_3725 0.30 -0.2
132,779 - Dshi_3725 0.31 -1.3
132,781 - Dshi_3725 0.32 +0.6
132,794 + Dshi_3725 0.33 +0.5
132,794 + Dshi_3725 0.33 +0.5
132,794 - +1.6
132,798 - Dshi_3725 0.34 -0.4
132,806 + Dshi_3725 0.34 +0.2
132,814 + Dshi_3725 0.35 +0.7
132,822 - Dshi_3725 0.36 +1.8
132,822 - Dshi_3725 0.36 +1.0
132,905 - Dshi_3725 0.46 +0.1
132,906 + Dshi_3725 0.46 -0.8
132,931 + Dshi_3725 0.49 -0.2
132,935 + Dshi_3725 0.49 -0.2
132,941 + Dshi_3725 0.50 +0.0
132,972 - Dshi_3725 0.53 +0.6
133,048 - Dshi_3725 0.62 -0.1
133,054 + Dshi_3725 0.62 +1.3
133,054 + Dshi_3725 0.62 -1.0
133,054 + Dshi_3725 0.62 -0.9
133,062 - Dshi_3725 0.63 +0.0
133,076 + Dshi_3725 0.65 -0.6
133,079 - Dshi_3725 0.65 -1.1
133,084 - Dshi_3725 0.66 -0.5
133,110 - Dshi_3725 0.69 +1.6
133,115 - Dshi_3725 0.69 +0.1
133,116 + Dshi_3725 0.69 -1.2
133,137 + Dshi_3725 0.72 -0.6
133,218 + Dshi_3725 0.81 -0.1
133,218 + Dshi_3725 0.81 -0.1
133,223 + Dshi_3725 0.82 +1.0
133,223 + Dshi_3725 0.82 +1.1
133,300 + +0.4
133,303 - -0.4
133,351 + +1.5
133,361 + +1.3
133,361 + -1.0
133,377 - -0.2
133,378 + +0.3
133,556 + Dshi_3726 0.17 +0.6
133,574 + Dshi_3726 0.19 +0.7
133,582 - Dshi_3726 0.20 -0.9
133,582 - Dshi_3726 0.20 +0.1
133,582 - Dshi_3726 0.20 -0.1
133,649 + Dshi_3726 0.26 +1.6
133,678 - Dshi_3726 0.29 -0.7
133,691 - Dshi_3726 0.30 -1.0
133,904 - Dshi_3726 0.51 -1.3
133,915 + Dshi_3726 0.52 -0.3
133,923 - Dshi_3726 0.53 +0.0
133,923 - Dshi_3726 0.53 +0.1
133,939 + Dshi_3726 0.55 -0.6
133,958 + Dshi_3726 0.56 -0.4
133,958 + Dshi_3726 0.56 -0.6
133,968 - Dshi_3726 0.57 +0.5
134,020 - Dshi_3726 0.62 +0.4
134,037 - Dshi_3726 0.64 -0.8
134,047 - Dshi_3726 0.65 -0.5
134,050 - Dshi_3726 0.65 -0.3
134,084 + Dshi_3726 0.69 +0.6
134,084 + Dshi_3726 0.69 -0.1
134,087 - Dshi_3726 0.69 -0.5
134,087 - Dshi_3726 0.69 +0.1
134,089 + Dshi_3726 0.69 +0.3
134,092 - Dshi_3726 0.69 -0.5
134,092 - Dshi_3726 0.69 +0.0
134,099 + Dshi_3726 0.70 -0.1
134,139 - Dshi_3726 0.74 +0.1
134,178 - Dshi_3726 0.78 -0.5
134,223 - Dshi_3726 0.82 -0.7
134,238 - Dshi_3726 0.84 +0.2
134,261 + Dshi_3726 0.86 -0.1
134,266 + Dshi_3726 0.86 +0.3
134,269 - Dshi_3726 0.87 -0.2
134,272 + Dshi_3726 0.87 +0.0
134,272 + Dshi_3726 0.87 -0.1
134,274 - Dshi_3726 0.87 -0.2
134,301 - Dshi_3726 0.90 -1.6
134,351 + +0.6
134,351 + +0.0
134,351 + +0.1
134,399 + +0.1
134,430 - +0.4
134,448 - +0.3
134,458 - +0.8
134,502 + Dshi_3727 0.13 +0.3
134,514 - Dshi_3727 0.15 -0.2
134,530 + Dshi_3727 0.17 +0.2
134,538 - Dshi_3727 0.18 -0.3
134,575 + Dshi_3727 0.23 -0.3
134,589 - Dshi_3727 0.25 -0.7
134,604 - Dshi_3727 0.27 -0.5
134,648 - Dshi_3727 0.33 -0.5
134,675 - Dshi_3727 0.37 -0.7
134,685 + Dshi_3727 0.38 +0.3
134,699 + Dshi_3727 0.40 -0.0
134,749 - Dshi_3727 0.47 +0.7
134,889 + Dshi_3727 0.66 +0.0
134,901 + Dshi_3727 0.67 +0.0
134,916 - Dshi_3727 0.69 +0.3
134,917 + Dshi_3727 0.69 -0.1
134,949 + Dshi_3727 0.74 +0.0
134,982 - Dshi_3727 0.78 +0.1
135,033 + Dshi_3727 0.85 +0.3
135,096 - -0.4
135,138 + +0.5
135,146 - -0.2
135,151 - -1.6
135,156 - -0.1
135,156 - +0.0
135,181 + -0.4
135,181 + +0.0
135,181 + +0.7
135,184 - +0.6
135,189 - -0.3
135,190 - -0.2
135,194 + +0.3
135,199 - -0.3
135,204 - +0.6
135,235 - Dshi_3728 0.14 +0.3
135,261 + Dshi_3728 0.18 -0.2
135,297 + Dshi_3728 0.23 -0.4
135,298 + Dshi_3728 0.23 -0.5
135,305 - Dshi_3728 0.24 -0.5
135,376 + Dshi_3728 0.34 -0.9

Or see this region's nucleotide sequence