Experiment: m.b. Chlorite 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3525 and Dshi_3526 are separated by 132 nucleotides Dshi_3526 and Dshi_3527 are separated by 113 nucleotides Dshi_3527 and Dshi_3528 overlap by 4 nucleotides
Dshi_3525: Dshi_3525 - photosynthetic reaction centre cytochrome c subunit (RefSeq), at 3,703,718 to 3,704,800
_3525
Dshi_3526: Dshi_3526 - deoxyxylulose-5-phosphate synthase (RefSeq), at 3,704,933 to 3,706,909
_3526
Dshi_3527: Dshi_3527 - isopentenyl-diphosphate delta-isomerase, type 1 (RefSeq), at 3,707,023 to 3,707,553
_3527
Dshi_3528: Dshi_3528 - geranylgeranyl reductase (RefSeq), at 3,707,550 to 3,708,734
_3528
Position (kb)
3704
3705
3706
3707 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3703.982 kb on - strand, within Dshi_3525 at 3704.080 kb on + strand, within Dshi_3525 at 3704.103 kb on + strand, within Dshi_3525 at 3704.118 kb on + strand, within Dshi_3525 at 3704.120 kb on - strand, within Dshi_3525 at 3704.128 kb on + strand, within Dshi_3525 at 3704.128 kb on + strand, within Dshi_3525 at 3704.194 kb on - strand, within Dshi_3525 at 3704.202 kb on + strand, within Dshi_3525 at 3704.370 kb on + strand, within Dshi_3525 at 3704.477 kb on - strand, within Dshi_3525 at 3704.540 kb on + strand, within Dshi_3525 at 3704.547 kb on + strand, within Dshi_3525 at 3704.565 kb on - strand, within Dshi_3525 at 3704.676 kb on + strand, within Dshi_3525 at 3705.054 kb on + strand at 3705.109 kb on + strand at 3705.190 kb on - strand, within Dshi_3526 at 3705.264 kb on + strand, within Dshi_3526 at 3705.329 kb on - strand, within Dshi_3526 at 3705.329 kb on - strand, within Dshi_3526 at 3705.475 kb on - strand, within Dshi_3526 at 3705.577 kb on + strand, within Dshi_3526 at 3705.637 kb on + strand, within Dshi_3526 at 3705.711 kb on + strand, within Dshi_3526 at 3705.725 kb on + strand, within Dshi_3526 at 3705.781 kb on + strand, within Dshi_3526 at 3705.815 kb on + strand, within Dshi_3526 at 3705.842 kb on + strand, within Dshi_3526 at 3705.856 kb on - strand, within Dshi_3526 at 3705.868 kb on + strand, within Dshi_3526 at 3705.946 kb on + strand, within Dshi_3526 at 3705.959 kb on - strand, within Dshi_3526 at 3705.959 kb on - strand, within Dshi_3526 at 3706.148 kb on - strand, within Dshi_3526 at 3706.185 kb on + strand, within Dshi_3526 at 3706.190 kb on + strand, within Dshi_3526 at 3706.192 kb on - strand, within Dshi_3526 at 3706.195 kb on + strand, within Dshi_3526 at 3706.266 kb on - strand, within Dshi_3526 at 3706.414 kb on - strand, within Dshi_3526 at 3706.488 kb on - strand, within Dshi_3526 at 3706.508 kb on + strand, within Dshi_3526 at 3706.511 kb on - strand, within Dshi_3526 at 3706.571 kb on - strand, within Dshi_3526 at 3706.663 kb on + strand, within Dshi_3526 at 3706.896 kb on - strand at 3707.780 kb on - strand, within Dshi_3528 at 3707.800 kb on + strand, within Dshi_3528 at 3707.812 kb on + strand, within Dshi_3528
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM remove 3,703,982 - Dshi_3525 0.24 +0.5 3,704,080 + Dshi_3525 0.33 +0.8 3,704,103 + Dshi_3525 0.36 +0.1 3,704,118 + Dshi_3525 0.37 +1.2 3,704,120 - Dshi_3525 0.37 +0.2 3,704,128 + Dshi_3525 0.38 +0.9 3,704,128 + Dshi_3525 0.38 +0.8 3,704,194 - Dshi_3525 0.44 +1.4 3,704,202 + Dshi_3525 0.45 +1.1 3,704,370 + Dshi_3525 0.60 -0.9 3,704,477 - Dshi_3525 0.70 -1.7 3,704,540 + Dshi_3525 0.76 +0.3 3,704,547 + Dshi_3525 0.77 +0.3 3,704,565 - Dshi_3525 0.78 +0.9 3,704,676 + Dshi_3525 0.88 -1.1 3,705,054 + -0.6 3,705,109 + +0.3 3,705,190 - Dshi_3526 0.13 +0.3 3,705,264 + Dshi_3526 0.17 +0.5 3,705,329 - Dshi_3526 0.20 -0.4 3,705,329 - Dshi_3526 0.20 -0.0 3,705,475 - Dshi_3526 0.27 +0.5 3,705,577 + Dshi_3526 0.33 -0.7 3,705,637 + Dshi_3526 0.36 +0.4 3,705,711 + Dshi_3526 0.39 +0.5 3,705,725 + Dshi_3526 0.40 +0.2 3,705,781 + Dshi_3526 0.43 -1.1 3,705,815 + Dshi_3526 0.45 +0.7 3,705,842 + Dshi_3526 0.46 +0.7 3,705,856 - Dshi_3526 0.47 -0.3 3,705,868 + Dshi_3526 0.47 -0.7 3,705,946 + Dshi_3526 0.51 +0.1 3,705,959 - Dshi_3526 0.52 +0.1 3,705,959 - Dshi_3526 0.52 +1.5 3,706,148 - Dshi_3526 0.61 +0.5 3,706,185 + Dshi_3526 0.63 +0.0 3,706,190 + Dshi_3526 0.64 +0.6 3,706,192 - Dshi_3526 0.64 -3.2 3,706,195 + Dshi_3526 0.64 +0.9 3,706,266 - Dshi_3526 0.67 -0.1 3,706,414 - Dshi_3526 0.75 +0.3 3,706,488 - Dshi_3526 0.79 -0.3 3,706,508 + Dshi_3526 0.80 +0.4 3,706,511 - Dshi_3526 0.80 +0.8 3,706,571 - Dshi_3526 0.83 +0.9 3,706,663 + Dshi_3526 0.88 +0.8 3,706,896 - +0.5 3,707,780 - Dshi_3528 0.19 -0.5 3,707,800 + Dshi_3528 0.21 +0.1 3,707,812 + Dshi_3528 0.22 -0.3
Or see this region's nucleotide sequence