Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3526

Experiment: m.b. Chlorite 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3525 and Dshi_3526 are separated by 132 nucleotidesDshi_3526 and Dshi_3527 are separated by 113 nucleotidesDshi_3527 and Dshi_3528 overlap by 4 nucleotides Dshi_3525: Dshi_3525 - photosynthetic reaction centre cytochrome c subunit (RefSeq), at 3,703,718 to 3,704,800 _3525 Dshi_3526: Dshi_3526 - deoxyxylulose-5-phosphate synthase (RefSeq), at 3,704,933 to 3,706,909 _3526 Dshi_3527: Dshi_3527 - isopentenyl-diphosphate delta-isomerase, type 1 (RefSeq), at 3,707,023 to 3,707,553 _3527 Dshi_3528: Dshi_3528 - geranylgeranyl reductase (RefSeq), at 3,707,550 to 3,708,734 _3528 Position (kb) 3704 3705 3706 3707Strain fitness (log2 ratio) -3 -2 -1 0 1at 3703.982 kb on - strand, within Dshi_3525at 3704.080 kb on + strand, within Dshi_3525at 3704.103 kb on + strand, within Dshi_3525at 3704.118 kb on + strand, within Dshi_3525at 3704.120 kb on - strand, within Dshi_3525at 3704.128 kb on + strand, within Dshi_3525at 3704.128 kb on + strand, within Dshi_3525at 3704.194 kb on - strand, within Dshi_3525at 3704.202 kb on + strand, within Dshi_3525at 3704.370 kb on + strand, within Dshi_3525at 3704.477 kb on - strand, within Dshi_3525at 3704.540 kb on + strand, within Dshi_3525at 3704.547 kb on + strand, within Dshi_3525at 3704.565 kb on - strand, within Dshi_3525at 3704.676 kb on + strand, within Dshi_3525at 3705.054 kb on + strandat 3705.109 kb on + strandat 3705.190 kb on - strand, within Dshi_3526at 3705.264 kb on + strand, within Dshi_3526at 3705.329 kb on - strand, within Dshi_3526at 3705.329 kb on - strand, within Dshi_3526at 3705.475 kb on - strand, within Dshi_3526at 3705.577 kb on + strand, within Dshi_3526at 3705.637 kb on + strand, within Dshi_3526at 3705.711 kb on + strand, within Dshi_3526at 3705.725 kb on + strand, within Dshi_3526at 3705.781 kb on + strand, within Dshi_3526at 3705.815 kb on + strand, within Dshi_3526at 3705.842 kb on + strand, within Dshi_3526at 3705.856 kb on - strand, within Dshi_3526at 3705.868 kb on + strand, within Dshi_3526at 3705.946 kb on + strand, within Dshi_3526at 3705.959 kb on - strand, within Dshi_3526at 3705.959 kb on - strand, within Dshi_3526at 3706.148 kb on - strand, within Dshi_3526at 3706.185 kb on + strand, within Dshi_3526at 3706.190 kb on + strand, within Dshi_3526at 3706.192 kb on - strand, within Dshi_3526at 3706.195 kb on + strand, within Dshi_3526at 3706.266 kb on - strand, within Dshi_3526at 3706.414 kb on - strand, within Dshi_3526at 3706.488 kb on - strand, within Dshi_3526at 3706.508 kb on + strand, within Dshi_3526at 3706.511 kb on - strand, within Dshi_3526at 3706.571 kb on - strand, within Dshi_3526at 3706.663 kb on + strand, within Dshi_3526at 3706.896 kb on - strandat 3707.780 kb on - strand, within Dshi_3528at 3707.800 kb on + strand, within Dshi_3528at 3707.812 kb on + strand, within Dshi_3528

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
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3,703,982 - Dshi_3525 0.24 +0.5
3,704,080 + Dshi_3525 0.33 +0.8
3,704,103 + Dshi_3525 0.36 +0.1
3,704,118 + Dshi_3525 0.37 +1.2
3,704,120 - Dshi_3525 0.37 +0.2
3,704,128 + Dshi_3525 0.38 +0.9
3,704,128 + Dshi_3525 0.38 +0.8
3,704,194 - Dshi_3525 0.44 +1.4
3,704,202 + Dshi_3525 0.45 +1.1
3,704,370 + Dshi_3525 0.60 -0.9
3,704,477 - Dshi_3525 0.70 -1.7
3,704,540 + Dshi_3525 0.76 +0.3
3,704,547 + Dshi_3525 0.77 +0.3
3,704,565 - Dshi_3525 0.78 +0.9
3,704,676 + Dshi_3525 0.88 -1.1
3,705,054 + -0.6
3,705,109 + +0.3
3,705,190 - Dshi_3526 0.13 +0.3
3,705,264 + Dshi_3526 0.17 +0.5
3,705,329 - Dshi_3526 0.20 -0.4
3,705,329 - Dshi_3526 0.20 -0.0
3,705,475 - Dshi_3526 0.27 +0.5
3,705,577 + Dshi_3526 0.33 -0.7
3,705,637 + Dshi_3526 0.36 +0.4
3,705,711 + Dshi_3526 0.39 +0.5
3,705,725 + Dshi_3526 0.40 +0.2
3,705,781 + Dshi_3526 0.43 -1.1
3,705,815 + Dshi_3526 0.45 +0.7
3,705,842 + Dshi_3526 0.46 +0.7
3,705,856 - Dshi_3526 0.47 -0.3
3,705,868 + Dshi_3526 0.47 -0.7
3,705,946 + Dshi_3526 0.51 +0.1
3,705,959 - Dshi_3526 0.52 +0.1
3,705,959 - Dshi_3526 0.52 +1.5
3,706,148 - Dshi_3526 0.61 +0.5
3,706,185 + Dshi_3526 0.63 +0.0
3,706,190 + Dshi_3526 0.64 +0.6
3,706,192 - Dshi_3526 0.64 -3.2
3,706,195 + Dshi_3526 0.64 +0.9
3,706,266 - Dshi_3526 0.67 -0.1
3,706,414 - Dshi_3526 0.75 +0.3
3,706,488 - Dshi_3526 0.79 -0.3
3,706,508 + Dshi_3526 0.80 +0.4
3,706,511 - Dshi_3526 0.80 +0.8
3,706,571 - Dshi_3526 0.83 +0.9
3,706,663 + Dshi_3526 0.88 +0.8
3,706,896 - +0.5
3,707,780 - Dshi_3528 0.19 -0.5
3,707,800 + Dshi_3528 0.21 +0.1
3,707,812 + Dshi_3528 0.22 -0.3

Or see this region's nucleotide sequence