Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3418

Experiment: m.b. Chlorite 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3417 and Dshi_3418 are separated by 10 nucleotidesDshi_3418 and Dshi_3419 are separated by 74 nucleotides Dshi_3417: Dshi_3417 - hypothetical protein (RefSeq), at 3,594,961 to 3,596,388 _3417 Dshi_3418: Dshi_3418 - HemY domain protein (RefSeq), at 3,596,399 to 3,597,907 _3418 Dshi_3419: Dshi_3419 - Amidase (RefSeq), at 3,597,982 to 3,599,307 _3419 Position (kb) 3596 3597 3598Strain fitness (log2 ratio) -2 -1 0 1 2at 3595.432 kb on + strand, within Dshi_3417at 3595.440 kb on - strand, within Dshi_3417at 3595.524 kb on + strand, within Dshi_3417at 3595.564 kb on + strand, within Dshi_3417at 3595.564 kb on - strand, within Dshi_3417at 3595.909 kb on + strand, within Dshi_3417at 3596.020 kb on + strand, within Dshi_3417at 3596.117 kb on + strand, within Dshi_3417at 3596.182 kb on - strand, within Dshi_3417at 3596.237 kb on + strand, within Dshi_3417at 3596.373 kb on + strandat 3596.832 kb on + strand, within Dshi_3418at 3596.884 kb on + strand, within Dshi_3418at 3597.273 kb on + strand, within Dshi_3418at 3597.741 kb on - strand, within Dshi_3418at 3597.743 kb on + strand, within Dshi_3418at 3597.779 kb on + strandat 3597.834 kb on + strandat 3597.867 kb on + strandat 3597.924 kb on + strandat 3597.924 kb on + strandat 3597.951 kb on + strandat 3598.021 kb on + strandat 3598.046 kb on - strandat 3598.272 kb on + strand, within Dshi_3419at 3598.333 kb on + strand, within Dshi_3419at 3598.341 kb on + strand, within Dshi_3419at 3598.375 kb on - strand, within Dshi_3419at 3598.420 kb on - strand, within Dshi_3419at 3598.471 kb on - strand, within Dshi_3419at 3598.581 kb on + strand, within Dshi_3419at 3598.625 kb on + strand, within Dshi_3419at 3598.630 kb on + strand, within Dshi_3419at 3598.671 kb on + strand, within Dshi_3419at 3598.679 kb on - strand, within Dshi_3419at 3598.688 kb on + strand, within Dshi_3419at 3598.688 kb on + strand, within Dshi_3419

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
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3,595,432 + Dshi_3417 0.33 +1.9
3,595,440 - Dshi_3417 0.34 -1.1
3,595,524 + Dshi_3417 0.39 -1.1
3,595,564 + Dshi_3417 0.42 -1.7
3,595,564 - Dshi_3417 0.42 -2.7
3,595,909 + Dshi_3417 0.66 -0.1
3,596,020 + Dshi_3417 0.74 -1.2
3,596,117 + Dshi_3417 0.81 +1.5
3,596,182 - Dshi_3417 0.86 -0.5
3,596,237 + Dshi_3417 0.89 -2.7
3,596,373 + -0.4
3,596,832 + Dshi_3418 0.29 -1.1
3,596,884 + Dshi_3418 0.32 -0.7
3,597,273 + Dshi_3418 0.58 -0.5
3,597,741 - Dshi_3418 0.89 -0.1
3,597,743 + Dshi_3418 0.89 +0.5
3,597,779 + +1.3
3,597,834 + +0.4
3,597,867 + -0.6
3,597,924 + -0.7
3,597,924 + -0.5
3,597,951 + -0.0
3,598,021 + +0.9
3,598,046 - -0.3
3,598,272 + Dshi_3419 0.22 +0.3
3,598,333 + Dshi_3419 0.26 -0.4
3,598,341 + Dshi_3419 0.27 +0.2
3,598,375 - Dshi_3419 0.30 +0.8
3,598,420 - Dshi_3419 0.33 -0.4
3,598,471 - Dshi_3419 0.37 -0.1
3,598,581 + Dshi_3419 0.45 -0.5
3,598,625 + Dshi_3419 0.48 +0.8
3,598,630 + Dshi_3419 0.49 -0.4
3,598,671 + Dshi_3419 0.52 -0.1
3,598,679 - Dshi_3419 0.53 +0.2
3,598,688 + Dshi_3419 0.53 -0.4
3,598,688 + Dshi_3419 0.53 -0.2

Or see this region's nucleotide sequence