Experiment: m.b. Chlorite 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3417 and Dshi_3418 are separated by 10 nucleotides Dshi_3418 and Dshi_3419 are separated by 74 nucleotides
Dshi_3417: Dshi_3417 - hypothetical protein (RefSeq), at 3,594,961 to 3,596,388
_3417
Dshi_3418: Dshi_3418 - HemY domain protein (RefSeq), at 3,596,399 to 3,597,907
_3418
Dshi_3419: Dshi_3419 - Amidase (RefSeq), at 3,597,982 to 3,599,307
_3419
Position (kb)
3596
3597
3598 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3595.432 kb on + strand, within Dshi_3417 at 3595.440 kb on - strand, within Dshi_3417 at 3595.524 kb on + strand, within Dshi_3417 at 3595.564 kb on + strand, within Dshi_3417 at 3595.564 kb on - strand, within Dshi_3417 at 3595.909 kb on + strand, within Dshi_3417 at 3596.020 kb on + strand, within Dshi_3417 at 3596.117 kb on + strand, within Dshi_3417 at 3596.182 kb on - strand, within Dshi_3417 at 3596.237 kb on + strand, within Dshi_3417 at 3596.373 kb on + strand at 3596.832 kb on + strand, within Dshi_3418 at 3596.884 kb on + strand, within Dshi_3418 at 3597.273 kb on + strand, within Dshi_3418 at 3597.741 kb on - strand, within Dshi_3418 at 3597.743 kb on + strand, within Dshi_3418 at 3597.779 kb on + strand at 3597.834 kb on + strand at 3597.867 kb on + strand at 3597.924 kb on + strand at 3597.924 kb on + strand at 3597.951 kb on + strand at 3598.021 kb on + strand at 3598.046 kb on - strand at 3598.272 kb on + strand, within Dshi_3419 at 3598.333 kb on + strand, within Dshi_3419 at 3598.341 kb on + strand, within Dshi_3419 at 3598.375 kb on - strand, within Dshi_3419 at 3598.420 kb on - strand, within Dshi_3419 at 3598.471 kb on - strand, within Dshi_3419 at 3598.581 kb on + strand, within Dshi_3419 at 3598.625 kb on + strand, within Dshi_3419 at 3598.630 kb on + strand, within Dshi_3419 at 3598.671 kb on + strand, within Dshi_3419 at 3598.679 kb on - strand, within Dshi_3419 at 3598.688 kb on + strand, within Dshi_3419 at 3598.688 kb on + strand, within Dshi_3419
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM remove 3,595,432 + Dshi_3417 0.33 +1.9 3,595,440 - Dshi_3417 0.34 -1.1 3,595,524 + Dshi_3417 0.39 -1.1 3,595,564 + Dshi_3417 0.42 -1.7 3,595,564 - Dshi_3417 0.42 -2.7 3,595,909 + Dshi_3417 0.66 -0.1 3,596,020 + Dshi_3417 0.74 -1.2 3,596,117 + Dshi_3417 0.81 +1.5 3,596,182 - Dshi_3417 0.86 -0.5 3,596,237 + Dshi_3417 0.89 -2.7 3,596,373 + -0.4 3,596,832 + Dshi_3418 0.29 -1.1 3,596,884 + Dshi_3418 0.32 -0.7 3,597,273 + Dshi_3418 0.58 -0.5 3,597,741 - Dshi_3418 0.89 -0.1 3,597,743 + Dshi_3418 0.89 +0.5 3,597,779 + +1.3 3,597,834 + +0.4 3,597,867 + -0.6 3,597,924 + -0.7 3,597,924 + -0.5 3,597,951 + -0.0 3,598,021 + +0.9 3,598,046 - -0.3 3,598,272 + Dshi_3419 0.22 +0.3 3,598,333 + Dshi_3419 0.26 -0.4 3,598,341 + Dshi_3419 0.27 +0.2 3,598,375 - Dshi_3419 0.30 +0.8 3,598,420 - Dshi_3419 0.33 -0.4 3,598,471 - Dshi_3419 0.37 -0.1 3,598,581 + Dshi_3419 0.45 -0.5 3,598,625 + Dshi_3419 0.48 +0.8 3,598,630 + Dshi_3419 0.49 -0.4 3,598,671 + Dshi_3419 0.52 -0.1 3,598,679 - Dshi_3419 0.53 +0.2 3,598,688 + Dshi_3419 0.53 -0.4 3,598,688 + Dshi_3419 0.53 -0.2
Or see this region's nucleotide sequence