Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3417

Experiment: m.b. Chlorite 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3415 and Dshi_3416 are separated by 51 nucleotidesDshi_3416 and Dshi_3417 are separated by 73 nucleotidesDshi_3417 and Dshi_3418 are separated by 10 nucleotides Dshi_3415: Dshi_3415 - putative metalloendopeptidase, glycoprotease family (RefSeq), at 3,593,049 to 3,594,119 _3415 Dshi_3416: Dshi_3416 - Uroporphyrinogen III synthase HEM4 (RefSeq), at 3,594,171 to 3,594,887 _3416 Dshi_3417: Dshi_3417 - hypothetical protein (RefSeq), at 3,594,961 to 3,596,388 _3417 Dshi_3418: Dshi_3418 - HemY domain protein (RefSeq), at 3,596,399 to 3,597,907 _3418 Position (kb) 3594 3595 3596 3597Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3594.114 kb on + strandat 3594.146 kb on - strandat 3594.842 kb on - strandat 3594.885 kb on - strandat 3595.021 kb on + strandat 3595.021 kb on + strandat 3595.061 kb on - strandat 3595.201 kb on - strand, within Dshi_3417at 3595.432 kb on + strand, within Dshi_3417at 3595.440 kb on - strand, within Dshi_3417at 3595.524 kb on + strand, within Dshi_3417at 3595.564 kb on + strand, within Dshi_3417at 3595.564 kb on - strand, within Dshi_3417at 3595.909 kb on + strand, within Dshi_3417at 3596.020 kb on + strand, within Dshi_3417at 3596.117 kb on + strand, within Dshi_3417at 3596.182 kb on - strand, within Dshi_3417at 3596.237 kb on + strand, within Dshi_3417at 3596.373 kb on + strandat 3596.832 kb on + strand, within Dshi_3418at 3596.884 kb on + strand, within Dshi_3418at 3597.273 kb on + strand, within Dshi_3418

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
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3,594,114 + +0.2
3,594,146 - +0.3
3,594,842 - -0.8
3,594,885 - -2.4
3,595,021 + -1.7
3,595,021 + -3.2
3,595,061 - -1.1
3,595,201 - Dshi_3417 0.17 -1.2
3,595,432 + Dshi_3417 0.33 +1.9
3,595,440 - Dshi_3417 0.34 -1.1
3,595,524 + Dshi_3417 0.39 -1.1
3,595,564 + Dshi_3417 0.42 -1.7
3,595,564 - Dshi_3417 0.42 -2.7
3,595,909 + Dshi_3417 0.66 -0.1
3,596,020 + Dshi_3417 0.74 -1.2
3,596,117 + Dshi_3417 0.81 +1.5
3,596,182 - Dshi_3417 0.86 -0.5
3,596,237 + Dshi_3417 0.89 -2.7
3,596,373 + -0.4
3,596,832 + Dshi_3418 0.29 -1.1
3,596,884 + Dshi_3418 0.32 -0.7
3,597,273 + Dshi_3418 0.58 -0.5

Or see this region's nucleotide sequence