Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3166

Experiment: m.b. Chlorite 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3165 and Dshi_3166 overlap by 14 nucleotidesDshi_3166 and Dshi_3167 overlap by 4 nucleotidesDshi_3167 and Dshi_3168 are separated by 414 nucleotides Dshi_3165: Dshi_3165 - periplasmic nitrate reductase, large subunit (RefSeq), at 3,328,696 to 3,331,191 _3165 Dshi_3166: Dshi_3166 - NapD family protein (RefSeq), at 3,331,178 to 3,331,480 _3166 Dshi_3167: Dshi_3167 - ferredoxin-type protein NapF (RefSeq), at 3,331,477 to 3,331,989 _3167 Dshi_3168: Dshi_3168 - ApbE family lipoprotein (RefSeq), at 3,332,404 to 3,333,345 _3168 Position (kb) 3331 3332Strain fitness (log2 ratio) -2 -1 0 1at 3330.209 kb on - strand, within Dshi_3165at 3330.209 kb on - strand, within Dshi_3165at 3330.444 kb on + strand, within Dshi_3165at 3330.449 kb on + strand, within Dshi_3165at 3330.468 kb on + strand, within Dshi_3165at 3330.512 kb on - strand, within Dshi_3165at 3330.567 kb on - strand, within Dshi_3165at 3330.577 kb on - strand, within Dshi_3165at 3330.640 kb on + strand, within Dshi_3165at 3330.644 kb on + strand, within Dshi_3165at 3330.707 kb on - strand, within Dshi_3165at 3330.717 kb on - strand, within Dshi_3165at 3330.726 kb on - strand, within Dshi_3165at 3330.730 kb on + strand, within Dshi_3165at 3330.730 kb on + strand, within Dshi_3165at 3330.834 kb on + strand, within Dshi_3165at 3330.869 kb on + strand, within Dshi_3165at 3330.953 kb on + strandat 3330.984 kb on - strandat 3331.184 kb on - strandat 3331.193 kb on + strandat 3331.193 kb on + strandat 3331.232 kb on - strand, within Dshi_3166at 3331.449 kb on - strand, within Dshi_3166at 3331.451 kb on + strandat 3331.482 kb on - strandat 3331.664 kb on + strand, within Dshi_3167at 3331.695 kb on - strand, within Dshi_3167at 3331.720 kb on - strand, within Dshi_3167at 3331.758 kb on + strand, within Dshi_3167at 3331.787 kb on - strand, within Dshi_3167at 3331.798 kb on - strand, within Dshi_3167at 3331.822 kb on - strand, within Dshi_3167at 3331.897 kb on + strand, within Dshi_3167at 3331.970 kb on + strandat 3331.985 kb on - strandat 3331.994 kb on + strandat 3332.026 kb on - strandat 3332.058 kb on - strandat 3332.064 kb on - strandat 3332.161 kb on + strandat 3332.169 kb on - strandat 3332.192 kb on - strandat 3332.222 kb on + strandat 3332.428 kb on - strandat 3332.464 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
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3,330,209 - Dshi_3165 0.61 -0.5
3,330,209 - Dshi_3165 0.61 -0.2
3,330,444 + Dshi_3165 0.70 -0.0
3,330,449 + Dshi_3165 0.70 +0.6
3,330,468 + Dshi_3165 0.71 +0.1
3,330,512 - Dshi_3165 0.73 -1.0
3,330,567 - Dshi_3165 0.75 +0.3
3,330,577 - Dshi_3165 0.75 +0.4
3,330,640 + Dshi_3165 0.78 +0.8
3,330,644 + Dshi_3165 0.78 -1.1
3,330,707 - Dshi_3165 0.81 +0.6
3,330,717 - Dshi_3165 0.81 -0.5
3,330,726 - Dshi_3165 0.81 -0.1
3,330,730 + Dshi_3165 0.81 -0.6
3,330,730 + Dshi_3165 0.81 +0.3
3,330,834 + Dshi_3165 0.86 -1.5
3,330,869 + Dshi_3165 0.87 +1.2
3,330,953 + -0.4
3,330,984 - +0.4
3,331,184 - +0.5
3,331,193 + +1.2
3,331,193 + -0.1
3,331,232 - Dshi_3166 0.18 -2.1
3,331,449 - Dshi_3166 0.89 -1.0
3,331,451 + -0.1
3,331,482 - +0.5
3,331,664 + Dshi_3167 0.36 +0.1
3,331,695 - Dshi_3167 0.42 +0.4
3,331,720 - Dshi_3167 0.47 +0.8
3,331,758 + Dshi_3167 0.55 -0.1
3,331,787 - Dshi_3167 0.60 +0.6
3,331,798 - Dshi_3167 0.63 -0.1
3,331,822 - Dshi_3167 0.67 -0.0
3,331,897 + Dshi_3167 0.82 +0.1
3,331,970 + -0.2
3,331,985 - -0.4
3,331,994 + -0.0
3,332,026 - +0.6
3,332,058 - +0.7
3,332,064 - +0.3
3,332,161 + -0.1
3,332,169 - -0.3
3,332,192 - -0.5
3,332,222 + +0.3
3,332,428 - -0.4
3,332,464 + -0.4

Or see this region's nucleotide sequence