Experiment: m.b. Chlorite 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3165 and Dshi_3166 overlap by 14 nucleotides Dshi_3166 and Dshi_3167 overlap by 4 nucleotides Dshi_3167 and Dshi_3168 are separated by 414 nucleotides
Dshi_3165: Dshi_3165 - periplasmic nitrate reductase, large subunit (RefSeq), at 3,328,696 to 3,331,191
_3165
Dshi_3166: Dshi_3166 - NapD family protein (RefSeq), at 3,331,178 to 3,331,480
_3166
Dshi_3167: Dshi_3167 - ferredoxin-type protein NapF (RefSeq), at 3,331,477 to 3,331,989
_3167
Dshi_3168: Dshi_3168 - ApbE family lipoprotein (RefSeq), at 3,332,404 to 3,333,345
_3168
Position (kb)
3331
3332 Strain fitness (log2 ratio)
-2
-1
0
1 at 3330.209 kb on - strand, within Dshi_3165 at 3330.209 kb on - strand, within Dshi_3165 at 3330.444 kb on + strand, within Dshi_3165 at 3330.449 kb on + strand, within Dshi_3165 at 3330.468 kb on + strand, within Dshi_3165 at 3330.512 kb on - strand, within Dshi_3165 at 3330.567 kb on - strand, within Dshi_3165 at 3330.577 kb on - strand, within Dshi_3165 at 3330.640 kb on + strand, within Dshi_3165 at 3330.644 kb on + strand, within Dshi_3165 at 3330.707 kb on - strand, within Dshi_3165 at 3330.717 kb on - strand, within Dshi_3165 at 3330.726 kb on - strand, within Dshi_3165 at 3330.730 kb on + strand, within Dshi_3165 at 3330.730 kb on + strand, within Dshi_3165 at 3330.834 kb on + strand, within Dshi_3165 at 3330.869 kb on + strand, within Dshi_3165 at 3330.953 kb on + strand at 3330.984 kb on - strand at 3331.184 kb on - strand at 3331.193 kb on + strand at 3331.193 kb on + strand at 3331.232 kb on - strand, within Dshi_3166 at 3331.449 kb on - strand, within Dshi_3166 at 3331.451 kb on + strand at 3331.482 kb on - strand at 3331.664 kb on + strand, within Dshi_3167 at 3331.695 kb on - strand, within Dshi_3167 at 3331.720 kb on - strand, within Dshi_3167 at 3331.758 kb on + strand, within Dshi_3167 at 3331.787 kb on - strand, within Dshi_3167 at 3331.798 kb on - strand, within Dshi_3167 at 3331.822 kb on - strand, within Dshi_3167 at 3331.897 kb on + strand, within Dshi_3167 at 3331.970 kb on + strand at 3331.985 kb on - strand at 3331.994 kb on + strand at 3332.026 kb on - strand at 3332.058 kb on - strand at 3332.064 kb on - strand at 3332.161 kb on + strand at 3332.169 kb on - strand at 3332.192 kb on - strand at 3332.222 kb on + strand at 3332.428 kb on - strand at 3332.464 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM remove 3,330,209 - Dshi_3165 0.61 -0.5 3,330,209 - Dshi_3165 0.61 -0.2 3,330,444 + Dshi_3165 0.70 -0.0 3,330,449 + Dshi_3165 0.70 +0.6 3,330,468 + Dshi_3165 0.71 +0.1 3,330,512 - Dshi_3165 0.73 -1.0 3,330,567 - Dshi_3165 0.75 +0.3 3,330,577 - Dshi_3165 0.75 +0.4 3,330,640 + Dshi_3165 0.78 +0.8 3,330,644 + Dshi_3165 0.78 -1.1 3,330,707 - Dshi_3165 0.81 +0.6 3,330,717 - Dshi_3165 0.81 -0.5 3,330,726 - Dshi_3165 0.81 -0.1 3,330,730 + Dshi_3165 0.81 -0.6 3,330,730 + Dshi_3165 0.81 +0.3 3,330,834 + Dshi_3165 0.86 -1.5 3,330,869 + Dshi_3165 0.87 +1.2 3,330,953 + -0.4 3,330,984 - +0.4 3,331,184 - +0.5 3,331,193 + +1.2 3,331,193 + -0.1 3,331,232 - Dshi_3166 0.18 -2.1 3,331,449 - Dshi_3166 0.89 -1.0 3,331,451 + -0.1 3,331,482 - +0.5 3,331,664 + Dshi_3167 0.36 +0.1 3,331,695 - Dshi_3167 0.42 +0.4 3,331,720 - Dshi_3167 0.47 +0.8 3,331,758 + Dshi_3167 0.55 -0.1 3,331,787 - Dshi_3167 0.60 +0.6 3,331,798 - Dshi_3167 0.63 -0.1 3,331,822 - Dshi_3167 0.67 -0.0 3,331,897 + Dshi_3167 0.82 +0.1 3,331,970 + -0.2 3,331,985 - -0.4 3,331,994 + -0.0 3,332,026 - +0.6 3,332,058 - +0.7 3,332,064 - +0.3 3,332,161 + -0.1 3,332,169 - -0.3 3,332,192 - -0.5 3,332,222 + +0.3 3,332,428 - -0.4 3,332,464 + -0.4
Or see this region's nucleotide sequence