Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3032

Experiment: m.b. Chlorite 0.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_3030 and Dshi_3031 are separated by 3 nucleotidesDshi_3031 and Dshi_3032 are separated by 342 nucleotidesDshi_3032 and Dshi_3033 are separated by 68 nucleotides Dshi_3030: Dshi_3030 - ATP synthase F0, A subunit (RefSeq), at 3,198,004 to 3,198,750 _3030 Dshi_3031: Dshi_3031 - ATP synthase F0, subunit I (RefSeq), at 3,198,754 to 3,199,086 _3031 Dshi_3032: Dshi_3032 - Heparinase II/III family protein (RefSeq), at 3,199,429 to 3,201,147 _3032 Dshi_3033: Dshi_3033 - Fmu (Sun) domain protein (RefSeq), at 3,201,216 to 3,202,547 _3033 Position (kb) 3199 3200 3201 3202Strain fitness (log2 ratio) -1 0 1at 3199.310 kb on + strandat 3199.318 kb on - strandat 3199.318 kb on - strandat 3199.318 kb on - strandat 3199.399 kb on - strandat 3199.448 kb on + strandat 3199.506 kb on - strandat 3199.684 kb on - strand, within Dshi_3032at 3199.736 kb on - strand, within Dshi_3032at 3199.821 kb on - strand, within Dshi_3032at 3200.430 kb on + strand, within Dshi_3032at 3201.107 kb on + strandat 3201.184 kb on - strandat 3201.196 kb on - strandat 3201.290 kb on + strandat 3201.401 kb on + strand, within Dshi_3033at 3201.443 kb on - strand, within Dshi_3033at 3201.655 kb on + strand, within Dshi_3033at 3201.655 kb on + strand, within Dshi_3033at 3201.693 kb on - strand, within Dshi_3033at 3201.782 kb on + strand, within Dshi_3033at 3201.782 kb on + strand, within Dshi_3033at 3201.816 kb on - strand, within Dshi_3033at 3201.844 kb on - strand, within Dshi_3033at 3202.085 kb on - strand, within Dshi_3033

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
remove
3,199,310 + +0.1
3,199,318 - +0.7
3,199,318 - -0.4
3,199,318 - +1.7
3,199,399 - +0.5
3,199,448 + -0.5
3,199,506 - -1.5
3,199,684 - Dshi_3032 0.15 +0.9
3,199,736 - Dshi_3032 0.18 -0.6
3,199,821 - Dshi_3032 0.23 -0.3
3,200,430 + Dshi_3032 0.58 -1.7
3,201,107 + +0.2
3,201,184 - -0.6
3,201,196 - +1.3
3,201,290 + +0.7
3,201,401 + Dshi_3033 0.14 +1.1
3,201,443 - Dshi_3033 0.17 -0.1
3,201,655 + Dshi_3033 0.33 +1.0
3,201,655 + Dshi_3033 0.33 -0.7
3,201,693 - Dshi_3033 0.36 +1.5
3,201,782 + Dshi_3033 0.42 -0.4
3,201,782 + Dshi_3033 0.42 -0.5
3,201,816 - Dshi_3033 0.45 -0.1
3,201,844 - Dshi_3033 0.47 -0.2
3,202,085 - Dshi_3033 0.65 -0.1

Or see this region's nucleotide sequence