Experiment: m.b. Chlorite 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3022 and Dshi_3023 overlap by 4 nucleotides Dshi_3023 and Dshi_3024 are separated by 111 nucleotides
Dshi_3022: Dshi_3022 - PfkB domain protein (RefSeq), at 3,192,313 to 3,193,314
_3022
Dshi_3023: Dshi_3023 - endonuclease III (RefSeq), at 3,193,311 to 3,193,955
_3023
Dshi_3024: Dshi_3024 - transcriptional regulator, AraC family (RefSeq), at 3,194,067 to 3,194,930
_3024
Position (kb)
3193
3194 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3192.311 kb on + strand at 3192.392 kb on - strand at 3192.629 kb on + strand, within Dshi_3022 at 3192.642 kb on - strand, within Dshi_3022 at 3192.642 kb on - strand, within Dshi_3022 at 3192.642 kb on - strand, within Dshi_3022 at 3192.749 kb on - strand, within Dshi_3022 at 3192.788 kb on + strand, within Dshi_3022 at 3192.979 kb on - strand, within Dshi_3022 at 3193.133 kb on + strand, within Dshi_3022 at 3193.133 kb on + strand, within Dshi_3022 at 3193.231 kb on + strand at 3193.295 kb on - strand at 3193.381 kb on + strand, within Dshi_3023 at 3193.571 kb on + strand, within Dshi_3023 at 3193.639 kb on + strand, within Dshi_3023 at 3193.698 kb on + strand, within Dshi_3023 at 3193.754 kb on - strand, within Dshi_3023 at 3193.808 kb on - strand, within Dshi_3023 at 3193.844 kb on + strand, within Dshi_3023 at 3193.872 kb on - strand, within Dshi_3023 at 3193.900 kb on + strand at 3193.971 kb on - strand at 3193.971 kb on - strand at 3194.015 kb on + strand at 3194.154 kb on + strand, within Dshi_3024 at 3194.160 kb on - strand, within Dshi_3024 at 3194.253 kb on - strand, within Dshi_3024 at 3194.308 kb on + strand, within Dshi_3024 at 3194.344 kb on - strand, within Dshi_3024 at 3194.428 kb on - strand, within Dshi_3024 at 3194.465 kb on + strand, within Dshi_3024 at 3194.465 kb on + strand, within Dshi_3024 at 3194.596 kb on - strand, within Dshi_3024 at 3194.639 kb on - strand, within Dshi_3024 at 3194.714 kb on - strand, within Dshi_3024 at 3194.756 kb on + strand, within Dshi_3024 at 3194.756 kb on + strand, within Dshi_3024 at 3194.764 kb on - strand, within Dshi_3024 at 3194.897 kb on - strand at 3194.921 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM remove 3,192,311 + +0.7 3,192,392 - +1.1 3,192,629 + Dshi_3022 0.32 +0.4 3,192,642 - Dshi_3022 0.33 +1.1 3,192,642 - Dshi_3022 0.33 +0.1 3,192,642 - Dshi_3022 0.33 +1.5 3,192,749 - Dshi_3022 0.44 +1.8 3,192,788 + Dshi_3022 0.47 +2.3 3,192,979 - Dshi_3022 0.66 +0.9 3,193,133 + Dshi_3022 0.82 +0.9 3,193,133 + Dshi_3022 0.82 +0.2 3,193,231 + +1.3 3,193,295 - +0.1 3,193,381 + Dshi_3023 0.11 +0.1 3,193,571 + Dshi_3023 0.40 -0.0 3,193,639 + Dshi_3023 0.51 -0.6 3,193,698 + Dshi_3023 0.60 +0.5 3,193,754 - Dshi_3023 0.69 +1.1 3,193,808 - Dshi_3023 0.77 +0.9 3,193,844 + Dshi_3023 0.83 +0.7 3,193,872 - Dshi_3023 0.87 +1.0 3,193,900 + +0.5 3,193,971 - -1.1 3,193,971 - +1.1 3,194,015 + +0.4 3,194,154 + Dshi_3024 0.10 -0.3 3,194,160 - Dshi_3024 0.11 +3.1 3,194,253 - Dshi_3024 0.22 -0.1 3,194,308 + Dshi_3024 0.28 -0.5 3,194,344 - Dshi_3024 0.32 -0.2 3,194,428 - Dshi_3024 0.42 -0.4 3,194,465 + Dshi_3024 0.46 +0.7 3,194,465 + Dshi_3024 0.46 +0.6 3,194,596 - Dshi_3024 0.61 -0.1 3,194,639 - Dshi_3024 0.66 +0.5 3,194,714 - Dshi_3024 0.75 +0.5 3,194,756 + Dshi_3024 0.80 -0.5 3,194,756 + Dshi_3024 0.80 -0.1 3,194,764 - Dshi_3024 0.81 +0.7 3,194,897 - -1.2 3,194,921 + +0.5
Or see this region's nucleotide sequence