Experiment: m.b. Chlorite 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2973 and Dshi_2974 are separated by 99 nucleotides Dshi_2974 and Dshi_2975 are separated by 4 nucleotides Dshi_2975 and Dshi_2976 overlap by 4 nucleotides
Dshi_2973: Dshi_2973 - Peptidyl-dipeptidase Dcp (RefSeq), at 3,139,524 to 3,141,545
_2973
Dshi_2974: Dshi_2974 - UBA/THIF-type NAD/FAD binding protein (RefSeq), at 3,141,645 to 3,142,685
_2974
Dshi_2975: Dshi_2975 - deoxyuridine 5'-triphosphate nucleotidohydrolase Dut (RefSeq), at 3,142,690 to 3,143,157
_2975
Dshi_2976: Dshi_2976 - phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase (RefSeq), at 3,143,154 to 3,144,347
_2976
Position (kb)
3141
3142
3143 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3140.655 kb on - strand, within Dshi_2973 at 3140.688 kb on - strand, within Dshi_2973 at 3140.761 kb on - strand, within Dshi_2973 at 3140.764 kb on + strand, within Dshi_2973 at 3140.772 kb on - strand, within Dshi_2973 at 3140.821 kb on - strand, within Dshi_2973 at 3140.827 kb on - strand, within Dshi_2973 at 3140.893 kb on - strand, within Dshi_2973 at 3140.926 kb on - strand, within Dshi_2973 at 3141.098 kb on - strand, within Dshi_2973 at 3141.179 kb on + strand, within Dshi_2973 at 3141.198 kb on - strand, within Dshi_2973 at 3141.303 kb on - strand, within Dshi_2973 at 3141.384 kb on + strand at 3141.478 kb on + strand at 3141.486 kb on - strand at 3141.566 kb on + strand at 3141.578 kb on + strand at 3141.626 kb on - strand at 3141.726 kb on - strand at 3141.830 kb on + strand, within Dshi_2974 at 3141.843 kb on - strand, within Dshi_2974 at 3141.907 kb on + strand, within Dshi_2974 at 3141.915 kb on - strand, within Dshi_2974 at 3141.924 kb on - strand, within Dshi_2974 at 3141.954 kb on + strand, within Dshi_2974 at 3141.967 kb on + strand, within Dshi_2974 at 3141.993 kb on - strand, within Dshi_2974 at 3141.995 kb on + strand, within Dshi_2974 at 3141.995 kb on + strand, within Dshi_2974 at 3142.062 kb on + strand, within Dshi_2974 at 3142.210 kb on - strand, within Dshi_2974 at 3142.263 kb on - strand, within Dshi_2974 at 3142.275 kb on + strand, within Dshi_2974 at 3142.309 kb on + strand, within Dshi_2974 at 3142.471 kb on + strand, within Dshi_2974 at 3142.585 kb on + strand at 3142.626 kb on - strand at 3142.700 kb on - strand at 3142.745 kb on - strand, within Dshi_2975 at 3142.905 kb on + strand, within Dshi_2975 at 3142.991 kb on - strand, within Dshi_2975
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM remove 3,140,655 - Dshi_2973 0.56 +0.3 3,140,688 - Dshi_2973 0.58 -0.7 3,140,761 - Dshi_2973 0.61 -0.2 3,140,764 + Dshi_2973 0.61 -0.0 3,140,772 - Dshi_2973 0.62 -0.0 3,140,821 - Dshi_2973 0.64 +1.5 3,140,827 - Dshi_2973 0.64 +0.6 3,140,893 - Dshi_2973 0.68 -0.3 3,140,926 - Dshi_2973 0.69 +0.6 3,141,098 - Dshi_2973 0.78 -0.1 3,141,179 + Dshi_2973 0.82 -1.1 3,141,198 - Dshi_2973 0.83 -1.9 3,141,303 - Dshi_2973 0.88 -0.0 3,141,384 + -0.6 3,141,478 + +0.1 3,141,486 - +0.2 3,141,566 + -0.4 3,141,578 + -0.2 3,141,626 - -0.1 3,141,726 - -1.7 3,141,830 + Dshi_2974 0.18 -0.5 3,141,843 - Dshi_2974 0.19 -3.1 3,141,907 + Dshi_2974 0.25 -3.3 3,141,915 - Dshi_2974 0.26 -1.9 3,141,924 - Dshi_2974 0.27 -2.1 3,141,954 + Dshi_2974 0.30 -1.1 3,141,967 + Dshi_2974 0.31 -2.6 3,141,993 - Dshi_2974 0.33 -1.7 3,141,995 + Dshi_2974 0.34 -2.4 3,141,995 + Dshi_2974 0.34 -1.7 3,142,062 + Dshi_2974 0.40 -2.7 3,142,210 - Dshi_2974 0.54 -2.7 3,142,263 - Dshi_2974 0.59 -1.1 3,142,275 + Dshi_2974 0.61 -1.6 3,142,309 + Dshi_2974 0.64 -0.8 3,142,471 + Dshi_2974 0.79 -0.6 3,142,585 + -0.1 3,142,626 - -1.4 3,142,700 - +0.7 3,142,745 - Dshi_2975 0.12 -0.2 3,142,905 + Dshi_2975 0.46 -0.3 3,142,991 - Dshi_2975 0.64 +0.0
Or see this region's nucleotide sequence