Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2917

Experiment: m.b. Chlorite 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2916 and Dshi_2917 are separated by 250 nucleotidesDshi_2917 and Dshi_2918 are separated by 28 nucleotidesDshi_2918 and Dshi_2919 are separated by 169 nucleotides Dshi_2916: Dshi_2916 - protein of unknown function DUF6 transmembrane (RefSeq), at 3,074,228 to 3,075,076 _2916 Dshi_2917: Dshi_2917 - amidohydrolase (RefSeq), at 3,075,327 to 3,076,484 _2917 Dshi_2918: Dshi_2918 - GCN5-related N-acetyltransferase (RefSeq), at 3,076,513 to 3,077,004 _2918 Dshi_2919: Dshi_2919 - chaperonin GroEL (RefSeq), at 3,077,174 to 3,078,817 _2919 Position (kb) 3075 3076 3077Strain fitness (log2 ratio) -1 0 1 2at 3074.415 kb on - strand, within Dshi_2916at 3074.465 kb on - strand, within Dshi_2916at 3074.473 kb on + strand, within Dshi_2916at 3074.605 kb on - strand, within Dshi_2916at 3074.645 kb on + strand, within Dshi_2916at 3074.777 kb on - strand, within Dshi_2916at 3074.842 kb on + strand, within Dshi_2916at 3074.850 kb on - strand, within Dshi_2916at 3074.850 kb on - strand, within Dshi_2916at 3074.981 kb on + strand, within Dshi_2916at 3074.989 kb on - strand, within Dshi_2916at 3075.009 kb on - strandat 3075.050 kb on - strandat 3075.061 kb on + strandat 3075.148 kb on + strandat 3075.171 kb on - strandat 3075.279 kb on - strandat 3075.320 kb on + strandat 3076.188 kb on - strand, within Dshi_2917at 3076.283 kb on + strand, within Dshi_2917at 3076.729 kb on + strand, within Dshi_2918at 3076.866 kb on + strand, within Dshi_2918at 3076.874 kb on - strand, within Dshi_2918at 3077.045 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
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3,074,415 - Dshi_2916 0.22 +0.2
3,074,465 - Dshi_2916 0.28 -0.0
3,074,473 + Dshi_2916 0.29 +0.5
3,074,605 - Dshi_2916 0.44 +0.3
3,074,645 + Dshi_2916 0.49 +0.0
3,074,777 - Dshi_2916 0.65 +0.6
3,074,842 + Dshi_2916 0.72 +2.3
3,074,850 - Dshi_2916 0.73 +0.5
3,074,850 - Dshi_2916 0.73 +0.9
3,074,981 + Dshi_2916 0.89 -0.3
3,074,989 - Dshi_2916 0.90 -0.7
3,075,009 - -0.3
3,075,050 - +0.1
3,075,061 + +0.5
3,075,148 + +0.0
3,075,171 - +0.4
3,075,279 - -0.2
3,075,320 + +1.2
3,076,188 - Dshi_2917 0.74 -1.0
3,076,283 + Dshi_2917 0.83 -0.4
3,076,729 + Dshi_2918 0.44 -0.4
3,076,866 + Dshi_2918 0.72 +0.8
3,076,874 - Dshi_2918 0.73 -0.8
3,077,045 - +0.3

Or see this region's nucleotide sequence