Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2896

Experiment: m.b. Chlorite 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2895 and Dshi_2896 are separated by 85 nucleotidesDshi_2896 and Dshi_2897 are separated by 155 nucleotidesDshi_2897 and Dshi_2898 are separated by 48 nucleotides Dshi_2895: Dshi_2895 - FAD linked oxidase domain protein (RefSeq), at 3,050,467 to 3,051,603 _2895 Dshi_2896: Dshi_2896 - FAD linked oxidase domain protein (RefSeq), at 3,051,689 to 3,053,131 _2896 Dshi_2897: Dshi_2897 - hypothetical protein (RefSeq), at 3,053,287 to 3,053,973 _2897 Dshi_2898: Dshi_2898 - PUCC protein (RefSeq), at 3,054,022 to 3,055,425 _2898 Position (kb) 3051 3052 3053 3054Strain fitness (log2 ratio) -3 -2 -1 0 1at 3050.754 kb on + strand, within Dshi_2895at 3050.849 kb on + strand, within Dshi_2895at 3051.011 kb on + strand, within Dshi_2895at 3051.080 kb on + strand, within Dshi_2895at 3051.080 kb on + strand, within Dshi_2895at 3051.262 kb on - strand, within Dshi_2895at 3051.392 kb on + strand, within Dshi_2895at 3051.400 kb on - strand, within Dshi_2895at 3051.413 kb on + strand, within Dshi_2895at 3051.458 kb on - strand, within Dshi_2895at 3051.461 kb on + strand, within Dshi_2895at 3051.538 kb on + strandat 3051.604 kb on - strandat 3051.620 kb on - strandat 3051.810 kb on + strandat 3051.818 kb on - strandat 3051.818 kb on - strandat 3052.024 kb on - strand, within Dshi_2896at 3052.024 kb on - strand, within Dshi_2896at 3052.024 kb on - strand, within Dshi_2896at 3052.059 kb on - strand, within Dshi_2896at 3052.097 kb on - strand, within Dshi_2896at 3052.197 kb on - strand, within Dshi_2896at 3052.274 kb on + strand, within Dshi_2896at 3052.337 kb on - strand, within Dshi_2896at 3052.536 kb on - strand, within Dshi_2896at 3052.617 kb on - strand, within Dshi_2896at 3052.693 kb on - strand, within Dshi_2896at 3052.693 kb on - strand, within Dshi_2896at 3052.887 kb on - strand, within Dshi_2896at 3052.907 kb on + strand, within Dshi_2896at 3052.993 kb on - strandat 3053.059 kb on - strandat 3053.077 kb on + strandat 3053.216 kb on - strandat 3053.265 kb on + strandat 3053.445 kb on - strand, within Dshi_2897at 3053.532 kb on - strand, within Dshi_2897at 3053.791 kb on - strand, within Dshi_2897at 3053.994 kb on - strandat 3054.028 kb on - strandat 3054.064 kb on - strandat 3054.088 kb on - strandat 3054.122 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
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3,050,754 + Dshi_2895 0.25 -0.0
3,050,849 + Dshi_2895 0.34 -0.3
3,051,011 + Dshi_2895 0.48 -0.2
3,051,080 + Dshi_2895 0.54 +0.0
3,051,080 + Dshi_2895 0.54 -0.7
3,051,262 - Dshi_2895 0.70 +0.4
3,051,392 + Dshi_2895 0.81 -0.0
3,051,400 - Dshi_2895 0.82 +0.5
3,051,413 + Dshi_2895 0.83 +0.1
3,051,458 - Dshi_2895 0.87 -0.4
3,051,461 + Dshi_2895 0.87 -1.7
3,051,538 + +0.4
3,051,604 - -0.1
3,051,620 - -0.7
3,051,810 + +1.5
3,051,818 - -0.1
3,051,818 - -0.8
3,052,024 - Dshi_2896 0.23 +0.3
3,052,024 - Dshi_2896 0.23 +0.2
3,052,024 - Dshi_2896 0.23 -1.2
3,052,059 - Dshi_2896 0.26 -0.3
3,052,097 - Dshi_2896 0.28 -0.6
3,052,197 - Dshi_2896 0.35 -0.9
3,052,274 + Dshi_2896 0.41 -0.9
3,052,337 - Dshi_2896 0.45 -0.3
3,052,536 - Dshi_2896 0.59 +0.1
3,052,617 - Dshi_2896 0.64 -0.9
3,052,693 - Dshi_2896 0.70 -0.7
3,052,693 - Dshi_2896 0.70 -0.6
3,052,887 - Dshi_2896 0.83 -0.7
3,052,907 + Dshi_2896 0.84 +0.5
3,052,993 - -0.8
3,053,059 - +0.1
3,053,077 + -0.5
3,053,216 - +0.4
3,053,265 + +0.8
3,053,445 - Dshi_2897 0.23 -0.1
3,053,532 - Dshi_2897 0.36 +0.1
3,053,791 - Dshi_2897 0.73 -0.8
3,053,994 - -3.4
3,054,028 - +0.3
3,054,064 - +0.9
3,054,088 - +0.2
3,054,122 - +0.3

Or see this region's nucleotide sequence