Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2749

Experiment: m.b. Chlorite 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2748 and Dshi_2749 are separated by 59 nucleotidesDshi_2749 and Dshi_2750 are separated by 478 nucleotides Dshi_2748: Dshi_2748 - glutamyl-tRNA synthetase (RefSeq), at 2,909,448 to 2,910,770 _2748 Dshi_2749: Dshi_2749 - Di-haem cytochrome c peroxidase (RefSeq), at 2,910,830 to 2,912,143 _2749 Dshi_2750: Dshi_2750 - hypothetical protein (RefSeq), at 2,912,622 to 2,913,089 _2750 Position (kb) 2910 2911 2912 2913Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2910.942 kb on - strandat 2911.086 kb on - strand, within Dshi_2749at 2911.131 kb on - strand, within Dshi_2749at 2911.277 kb on + strand, within Dshi_2749at 2911.277 kb on + strand, within Dshi_2749at 2911.333 kb on - strand, within Dshi_2749at 2911.359 kb on + strand, within Dshi_2749at 2911.497 kb on + strand, within Dshi_2749at 2911.497 kb on + strand, within Dshi_2749at 2911.505 kb on - strand, within Dshi_2749at 2911.505 kb on - strand, within Dshi_2749at 2911.505 kb on - strand, within Dshi_2749at 2911.507 kb on + strand, within Dshi_2749at 2911.507 kb on + strand, within Dshi_2749at 2911.583 kb on - strand, within Dshi_2749at 2911.610 kb on + strand, within Dshi_2749at 2911.618 kb on - strand, within Dshi_2749at 2911.637 kb on - strand, within Dshi_2749at 2911.785 kb on + strand, within Dshi_2749at 2911.803 kb on - strand, within Dshi_2749at 2911.975 kb on - strand, within Dshi_2749at 2912.028 kb on + strandat 2912.093 kb on - strandat 2912.108 kb on - strandat 2912.131 kb on - strandat 2912.131 kb on - strandat 2912.178 kb on + strandat 2912.180 kb on - strandat 2912.251 kb on + strandat 2912.251 kb on + strandat 2912.335 kb on + strandat 2912.336 kb on + strandat 2912.343 kb on - strandat 2912.372 kb on + strandat 2912.460 kb on + strandat 2912.587 kb on + strandat 2912.588 kb on + strandat 2912.683 kb on + strand, within Dshi_2750at 2912.841 kb on + strand, within Dshi_2750at 2912.918 kb on - strand, within Dshi_2750at 2913.093 kb on - strandat 2913.124 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
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2,910,942 - -0.0
2,911,086 - Dshi_2749 0.19 +0.5
2,911,131 - Dshi_2749 0.23 +0.1
2,911,277 + Dshi_2749 0.34 -3.5
2,911,277 + Dshi_2749 0.34 +0.6
2,911,333 - Dshi_2749 0.38 +0.2
2,911,359 + Dshi_2749 0.40 -0.3
2,911,497 + Dshi_2749 0.51 +0.6
2,911,497 + Dshi_2749 0.51 +1.8
2,911,505 - Dshi_2749 0.51 +0.5
2,911,505 - Dshi_2749 0.51 -0.1
2,911,505 - Dshi_2749 0.51 -1.3
2,911,507 + Dshi_2749 0.52 +0.4
2,911,507 + Dshi_2749 0.52 +0.8
2,911,583 - Dshi_2749 0.57 +0.4
2,911,610 + Dshi_2749 0.59 +0.1
2,911,618 - Dshi_2749 0.60 +0.2
2,911,637 - Dshi_2749 0.61 -0.3
2,911,785 + Dshi_2749 0.73 +0.3
2,911,803 - Dshi_2749 0.74 +1.0
2,911,975 - Dshi_2749 0.87 +0.5
2,912,028 + +1.0
2,912,093 - +1.5
2,912,108 - +0.3
2,912,131 - -0.1
2,912,131 - +0.9
2,912,178 + +0.5
2,912,180 - +0.6
2,912,251 + +0.6
2,912,251 + -0.2
2,912,335 + +0.2
2,912,336 + +0.0
2,912,343 - -1.1
2,912,372 + +0.5
2,912,460 + -0.1
2,912,587 + +0.2
2,912,588 + +0.2
2,912,683 + Dshi_2750 0.13 +0.2
2,912,841 + Dshi_2750 0.47 +0.4
2,912,918 - Dshi_2750 0.63 +0.9
2,913,093 - +0.5
2,913,124 - -1.1

Or see this region's nucleotide sequence