Experiment: m.b. Chlorite 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2686 and Dshi_2687 are separated by 226 nucleotides Dshi_2687 and Dshi_2688 are separated by 277 nucleotides Dshi_2688 and Dshi_2689 are separated by 4 nucleotides
Dshi_2686: Dshi_2686 - UspA domain protein (RefSeq), at 2,846,962 to 2,847,378
_2686
Dshi_2687: Dshi_2687 - pseudoazurin (RefSeq), at 2,847,605 to 2,848,090
_2687
Dshi_2688: Dshi_2688 - cytochrome bd ubiquinol oxidase subunit I (RefSeq), at 2,848,368 to 2,849,762
_2688
Dshi_2689: Dshi_2689 - cytochrome bd ubiquinol oxidase subunit II (RefSeq), at 2,849,767 to 2,850,780
_2689
Position (kb)
2848
2849
2850 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2847.647 kb on - strand at 2847.671 kb on + strand, within Dshi_2687 at 2847.672 kb on + strand, within Dshi_2687 at 2847.682 kb on + strand, within Dshi_2687 at 2847.682 kb on + strand, within Dshi_2687 at 2847.682 kb on + strand, within Dshi_2687 at 2847.682 kb on + strand, within Dshi_2687 at 2847.690 kb on - strand, within Dshi_2687 at 2847.726 kb on - strand, within Dshi_2687 at 2847.754 kb on + strand, within Dshi_2687 at 2847.846 kb on - strand, within Dshi_2687 at 2847.954 kb on + strand, within Dshi_2687 at 2848.016 kb on - strand, within Dshi_2687 at 2848.044 kb on - strand at 2848.051 kb on - strand at 2848.469 kb on - strand at 2848.572 kb on + strand, within Dshi_2688 at 2848.728 kb on - strand, within Dshi_2688 at 2848.832 kb on - strand, within Dshi_2688 at 2848.890 kb on - strand, within Dshi_2688 at 2848.912 kb on + strand, within Dshi_2688 at 2848.912 kb on + strand, within Dshi_2688 at 2848.919 kb on - strand, within Dshi_2688 at 2848.933 kb on - strand, within Dshi_2688 at 2849.025 kb on + strand, within Dshi_2688 at 2849.195 kb on - strand, within Dshi_2688 at 2849.277 kb on - strand, within Dshi_2688 at 2849.424 kb on + strand, within Dshi_2688 at 2849.435 kb on + strand, within Dshi_2688 at 2849.565 kb on - strand, within Dshi_2688 at 2849.727 kb on - strand at 2849.749 kb on + strand at 2849.758 kb on + strand at 2849.808 kb on + strand at 2849.844 kb on - strand at 2849.861 kb on + strand at 2849.878 kb on + strand, within Dshi_2689 at 2850.062 kb on + strand, within Dshi_2689 at 2850.070 kb on - strand, within Dshi_2689 at 2850.110 kb on - strand, within Dshi_2689 at 2850.139 kb on + strand, within Dshi_2689 at 2850.170 kb on + strand, within Dshi_2689 at 2850.216 kb on + strand, within Dshi_2689 at 2850.224 kb on - strand, within Dshi_2689 at 2850.225 kb on - strand, within Dshi_2689 at 2850.252 kb on + strand, within Dshi_2689 at 2850.266 kb on - strand, within Dshi_2689 at 2850.273 kb on - strand, within Dshi_2689 at 2850.303 kb on + strand, within Dshi_2689 at 2850.339 kb on + strand, within Dshi_2689 at 2850.346 kb on + strand, within Dshi_2689 at 2850.359 kb on - strand, within Dshi_2689 at 2850.371 kb on - strand, within Dshi_2689 at 2850.372 kb on - strand, within Dshi_2689 at 2850.453 kb on + strand, within Dshi_2689 at 2850.615 kb on - strand, within Dshi_2689 at 2850.735 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM remove 2,847,647 - +0.2 2,847,671 + Dshi_2687 0.14 -0.4 2,847,672 + Dshi_2687 0.14 +0.3 2,847,682 + Dshi_2687 0.16 +0.1 2,847,682 + Dshi_2687 0.16 +0.1 2,847,682 + Dshi_2687 0.16 +0.8 2,847,682 + Dshi_2687 0.16 -0.3 2,847,690 - Dshi_2687 0.17 +0.4 2,847,726 - Dshi_2687 0.25 +1.4 2,847,754 + Dshi_2687 0.31 +0.9 2,847,846 - Dshi_2687 0.50 -0.6 2,847,954 + Dshi_2687 0.72 +1.1 2,848,016 - Dshi_2687 0.85 +0.6 2,848,044 - +0.3 2,848,051 - -0.0 2,848,469 - -3.6 2,848,572 + Dshi_2688 0.15 -3.2 2,848,728 - Dshi_2688 0.26 -2.7 2,848,832 - Dshi_2688 0.33 -3.1 2,848,890 - Dshi_2688 0.37 -3.2 2,848,912 + Dshi_2688 0.39 -1.7 2,848,912 + Dshi_2688 0.39 -4.9 2,848,919 - Dshi_2688 0.39 -0.2 2,848,933 - Dshi_2688 0.41 -2.7 2,849,025 + Dshi_2688 0.47 -3.3 2,849,195 - Dshi_2688 0.59 -2.6 2,849,277 - Dshi_2688 0.65 -1.2 2,849,424 + Dshi_2688 0.76 -3.7 2,849,435 + Dshi_2688 0.76 -3.2 2,849,565 - Dshi_2688 0.86 -2.5 2,849,727 - -4.4 2,849,749 + -3.3 2,849,758 + +0.4 2,849,808 + -3.0 2,849,844 - -0.8 2,849,861 + -4.6 2,849,878 + Dshi_2689 0.11 -2.5 2,850,062 + Dshi_2689 0.29 -0.5 2,850,070 - Dshi_2689 0.30 -2.2 2,850,110 - Dshi_2689 0.34 -1.7 2,850,139 + Dshi_2689 0.37 -3.5 2,850,170 + Dshi_2689 0.40 -2.2 2,850,216 + Dshi_2689 0.44 -2.5 2,850,224 - Dshi_2689 0.45 -2.2 2,850,225 - Dshi_2689 0.45 -3.9 2,850,252 + Dshi_2689 0.48 -2.6 2,850,266 - Dshi_2689 0.49 -3.2 2,850,273 - Dshi_2689 0.50 -3.2 2,850,303 + Dshi_2689 0.53 -3.2 2,850,339 + Dshi_2689 0.56 -3.2 2,850,346 + Dshi_2689 0.57 -4.2 2,850,359 - Dshi_2689 0.58 -3.7 2,850,371 - Dshi_2689 0.60 -2.0 2,850,372 - Dshi_2689 0.60 -3.3 2,850,453 + Dshi_2689 0.68 -2.7 2,850,615 - Dshi_2689 0.84 -4.4 2,850,735 - -2.7
Or see this region's nucleotide sequence