Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2688

Experiment: m.b. Chlorite 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2686 and Dshi_2687 are separated by 226 nucleotidesDshi_2687 and Dshi_2688 are separated by 277 nucleotidesDshi_2688 and Dshi_2689 are separated by 4 nucleotides Dshi_2686: Dshi_2686 - UspA domain protein (RefSeq), at 2,846,962 to 2,847,378 _2686 Dshi_2687: Dshi_2687 - pseudoazurin (RefSeq), at 2,847,605 to 2,848,090 _2687 Dshi_2688: Dshi_2688 - cytochrome bd ubiquinol oxidase subunit I (RefSeq), at 2,848,368 to 2,849,762 _2688 Dshi_2689: Dshi_2689 - cytochrome bd ubiquinol oxidase subunit II (RefSeq), at 2,849,767 to 2,850,780 _2689 Position (kb) 2848 2849 2850Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2847.647 kb on - strandat 2847.671 kb on + strand, within Dshi_2687at 2847.672 kb on + strand, within Dshi_2687at 2847.682 kb on + strand, within Dshi_2687at 2847.682 kb on + strand, within Dshi_2687at 2847.682 kb on + strand, within Dshi_2687at 2847.682 kb on + strand, within Dshi_2687at 2847.690 kb on - strand, within Dshi_2687at 2847.726 kb on - strand, within Dshi_2687at 2847.754 kb on + strand, within Dshi_2687at 2847.846 kb on - strand, within Dshi_2687at 2847.954 kb on + strand, within Dshi_2687at 2848.016 kb on - strand, within Dshi_2687at 2848.044 kb on - strandat 2848.051 kb on - strandat 2848.469 kb on - strandat 2848.572 kb on + strand, within Dshi_2688at 2848.728 kb on - strand, within Dshi_2688at 2848.832 kb on - strand, within Dshi_2688at 2848.890 kb on - strand, within Dshi_2688at 2848.912 kb on + strand, within Dshi_2688at 2848.912 kb on + strand, within Dshi_2688at 2848.919 kb on - strand, within Dshi_2688at 2848.933 kb on - strand, within Dshi_2688at 2849.025 kb on + strand, within Dshi_2688at 2849.195 kb on - strand, within Dshi_2688at 2849.277 kb on - strand, within Dshi_2688at 2849.424 kb on + strand, within Dshi_2688at 2849.435 kb on + strand, within Dshi_2688at 2849.565 kb on - strand, within Dshi_2688at 2849.727 kb on - strandat 2849.749 kb on + strandat 2849.758 kb on + strandat 2849.808 kb on + strandat 2849.844 kb on - strandat 2849.861 kb on + strandat 2849.878 kb on + strand, within Dshi_2689at 2850.062 kb on + strand, within Dshi_2689at 2850.070 kb on - strand, within Dshi_2689at 2850.110 kb on - strand, within Dshi_2689at 2850.139 kb on + strand, within Dshi_2689at 2850.170 kb on + strand, within Dshi_2689at 2850.216 kb on + strand, within Dshi_2689at 2850.224 kb on - strand, within Dshi_2689at 2850.225 kb on - strand, within Dshi_2689at 2850.252 kb on + strand, within Dshi_2689at 2850.266 kb on - strand, within Dshi_2689at 2850.273 kb on - strand, within Dshi_2689at 2850.303 kb on + strand, within Dshi_2689at 2850.339 kb on + strand, within Dshi_2689at 2850.346 kb on + strand, within Dshi_2689at 2850.359 kb on - strand, within Dshi_2689at 2850.371 kb on - strand, within Dshi_2689at 2850.372 kb on - strand, within Dshi_2689at 2850.453 kb on + strand, within Dshi_2689at 2850.615 kb on - strand, within Dshi_2689at 2850.735 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
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2,847,647 - +0.2
2,847,671 + Dshi_2687 0.14 -0.4
2,847,672 + Dshi_2687 0.14 +0.3
2,847,682 + Dshi_2687 0.16 +0.1
2,847,682 + Dshi_2687 0.16 +0.1
2,847,682 + Dshi_2687 0.16 +0.8
2,847,682 + Dshi_2687 0.16 -0.3
2,847,690 - Dshi_2687 0.17 +0.4
2,847,726 - Dshi_2687 0.25 +1.4
2,847,754 + Dshi_2687 0.31 +0.9
2,847,846 - Dshi_2687 0.50 -0.6
2,847,954 + Dshi_2687 0.72 +1.1
2,848,016 - Dshi_2687 0.85 +0.6
2,848,044 - +0.3
2,848,051 - -0.0
2,848,469 - -3.6
2,848,572 + Dshi_2688 0.15 -3.2
2,848,728 - Dshi_2688 0.26 -2.7
2,848,832 - Dshi_2688 0.33 -3.1
2,848,890 - Dshi_2688 0.37 -3.2
2,848,912 + Dshi_2688 0.39 -1.7
2,848,912 + Dshi_2688 0.39 -4.9
2,848,919 - Dshi_2688 0.39 -0.2
2,848,933 - Dshi_2688 0.41 -2.7
2,849,025 + Dshi_2688 0.47 -3.3
2,849,195 - Dshi_2688 0.59 -2.6
2,849,277 - Dshi_2688 0.65 -1.2
2,849,424 + Dshi_2688 0.76 -3.7
2,849,435 + Dshi_2688 0.76 -3.2
2,849,565 - Dshi_2688 0.86 -2.5
2,849,727 - -4.4
2,849,749 + -3.3
2,849,758 + +0.4
2,849,808 + -3.0
2,849,844 - -0.8
2,849,861 + -4.6
2,849,878 + Dshi_2689 0.11 -2.5
2,850,062 + Dshi_2689 0.29 -0.5
2,850,070 - Dshi_2689 0.30 -2.2
2,850,110 - Dshi_2689 0.34 -1.7
2,850,139 + Dshi_2689 0.37 -3.5
2,850,170 + Dshi_2689 0.40 -2.2
2,850,216 + Dshi_2689 0.44 -2.5
2,850,224 - Dshi_2689 0.45 -2.2
2,850,225 - Dshi_2689 0.45 -3.9
2,850,252 + Dshi_2689 0.48 -2.6
2,850,266 - Dshi_2689 0.49 -3.2
2,850,273 - Dshi_2689 0.50 -3.2
2,850,303 + Dshi_2689 0.53 -3.2
2,850,339 + Dshi_2689 0.56 -3.2
2,850,346 + Dshi_2689 0.57 -4.2
2,850,359 - Dshi_2689 0.58 -3.7
2,850,371 - Dshi_2689 0.60 -2.0
2,850,372 - Dshi_2689 0.60 -3.3
2,850,453 + Dshi_2689 0.68 -2.7
2,850,615 - Dshi_2689 0.84 -4.4
2,850,735 - -2.7

Or see this region's nucleotide sequence