Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2475

Experiment: m.b. Chlorite 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2474 and Dshi_2475 are separated by 4 nucleotidesDshi_2475 and Dshi_2476 are separated by 646 nucleotides Dshi_2474: Dshi_2474 - S-adenosyl-methyltransferase MraW (RefSeq), at 2,626,611 to 2,627,612 _2474 Dshi_2475: Dshi_2475 - protein of unknown function UPF0040 (RefSeq), at 2,627,617 to 2,628,129 _2475 Dshi_2476: Dshi_2476 - septum formation inhibitor-activating ATPase-like protein (RefSeq), at 2,628,776 to 2,629,864 _2476 Position (kb) 2627 2628 2629Strain fitness (log2 ratio) -3 -2 -1 0 1at 2626.630 kb on + strandat 2626.655 kb on - strandat 2626.772 kb on + strand, within Dshi_2474at 2627.037 kb on - strand, within Dshi_2474at 2627.210 kb on - strand, within Dshi_2474at 2627.526 kb on - strandat 2627.853 kb on - strand, within Dshi_2475at 2627.950 kb on + strand, within Dshi_2475at 2627.957 kb on - strand, within Dshi_2475at 2628.008 kb on - strand, within Dshi_2475at 2628.254 kb on - strandat 2628.541 kb on - strandat 2628.675 kb on - strandat 2628.735 kb on - strandat 2628.759 kb on + strandat 2628.774 kb on + strandat 2628.782 kb on - strandat 2628.782 kb on - strandat 2628.782 kb on - strandat 2628.782 kb on - strandat 2628.782 kb on - strandat 2628.802 kb on - strandat 2628.802 kb on - strandat 2628.837 kb on - strandat 2628.854 kb on - strandat 2628.964 kb on + strand, within Dshi_2476at 2629.000 kb on - strand, within Dshi_2476at 2629.000 kb on - strand, within Dshi_2476at 2629.008 kb on + strand, within Dshi_2476at 2629.014 kb on + strand, within Dshi_2476at 2629.019 kb on + strand, within Dshi_2476at 2629.080 kb on + strand, within Dshi_2476at 2629.127 kb on + strand, within Dshi_2476

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
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2,626,630 + -0.8
2,626,655 - -0.3
2,626,772 + Dshi_2474 0.16 -0.5
2,627,037 - Dshi_2474 0.43 -1.7
2,627,210 - Dshi_2474 0.60 -3.2
2,627,526 - -0.5
2,627,853 - Dshi_2475 0.46 -0.9
2,627,950 + Dshi_2475 0.65 -2.0
2,627,957 - Dshi_2475 0.66 -0.4
2,628,008 - Dshi_2475 0.76 -1.4
2,628,254 - -2.2
2,628,541 - -2.3
2,628,675 - +0.6
2,628,735 - +0.3
2,628,759 + -0.7
2,628,774 + -0.7
2,628,782 - -1.4
2,628,782 - -0.9
2,628,782 - -0.1
2,628,782 - +0.5
2,628,782 - +1.0
2,628,802 - -0.2
2,628,802 - -0.2
2,628,837 - -0.2
2,628,854 - +0.6
2,628,964 + Dshi_2476 0.17 -0.4
2,629,000 - Dshi_2476 0.21 -0.2
2,629,000 - Dshi_2476 0.21 +0.8
2,629,008 + Dshi_2476 0.21 -0.2
2,629,014 + Dshi_2476 0.22 +0.3
2,629,019 + Dshi_2476 0.22 -0.2
2,629,080 + Dshi_2476 0.28 +0.2
2,629,127 + Dshi_2476 0.32 -3.3

Or see this region's nucleotide sequence