Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2092

Experiment: m.b. Chlorite 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2090 and Dshi_2091 are separated by 52 nucleotidesDshi_2091 and Dshi_2092 are separated by 89 nucleotidesDshi_2092 and Dshi_2093 are separated by 15 nucleotidesDshi_2093 and Dshi_2094 are separated by 330 nucleotides Dshi_2090: Dshi_2090 - Serine--glyoxylate transaminase (RefSeq), at 2,214,205 to 2,215,461 _2090 Dshi_2091: Dshi_2091 - glycosyl transferase family 2 (RefSeq), at 2,215,514 to 2,216,209 _2091 Dshi_2092: Dshi_2092 - glycine cleavage T protein (aminomethyl transferase) (RefSeq), at 2,216,299 to 2,217,084 _2092 Dshi_2093: Dshi_2093 - hypothetical protein (RefSeq), at 2,217,100 to 2,217,546 _2093 Dshi_2094: Dshi_2094 - translation elongation factor P (RefSeq), at 2,217,877 to 2,218,518 _2094 Position (kb) 2216 2217 2218Strain fitness (log2 ratio) -2 -1 0 1at 2215.310 kb on + strand, within Dshi_2090at 2215.336 kb on - strandat 2215.478 kb on - strandat 2215.497 kb on - strandat 2215.497 kb on - strandat 2215.511 kb on + strandat 2215.637 kb on - strand, within Dshi_2091at 2215.705 kb on - strandat 2215.778 kb on - strand, within Dshi_2091at 2215.785 kb on + strand, within Dshi_2091at 2215.793 kb on - strand, within Dshi_2091at 2215.828 kb on - strand, within Dshi_2091at 2216.135 kb on - strand, within Dshi_2091at 2216.147 kb on - strandat 2216.205 kb on + strandat 2216.213 kb on - strandat 2216.310 kb on + strandat 2216.318 kb on - strandat 2216.318 kb on - strandat 2216.318 kb on - strandat 2216.318 kb on - strandat 2216.318 kb on - strandat 2216.508 kb on + strand, within Dshi_2092at 2216.556 kb on + strandat 2216.785 kb on + strand, within Dshi_2092at 2216.891 kb on - strand, within Dshi_2092at 2217.301 kb on + strand, within Dshi_2093at 2217.328 kb on - strand, within Dshi_2093at 2217.371 kb on + strand, within Dshi_2093at 2217.425 kb on - strand, within Dshi_2093at 2217.499 kb on - strand, within Dshi_2093at 2217.575 kb on + strandat 2217.735 kb on - strandat 2217.798 kb on + strandat 2217.890 kb on + strandat 2217.922 kb on + strandat 2217.931 kb on - strandat 2217.958 kb on - strand, within Dshi_2094at 2217.975 kb on - strand, within Dshi_2094at 2218.018 kb on - strand, within Dshi_2094

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
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2,215,310 + Dshi_2090 0.88 +0.7
2,215,336 - -0.8
2,215,478 - -0.2
2,215,497 - +0.3
2,215,497 - -0.1
2,215,511 + +0.1
2,215,637 - Dshi_2091 0.18 -1.1
2,215,705 - -1.2
2,215,778 - Dshi_2091 0.38 +0.3
2,215,785 + Dshi_2091 0.39 -0.2
2,215,793 - Dshi_2091 0.40 -0.1
2,215,828 - Dshi_2091 0.45 +0.0
2,216,135 - Dshi_2091 0.89 +0.7
2,216,147 - -0.3
2,216,205 + -0.6
2,216,213 - -0.0
2,216,310 + +0.7
2,216,318 - -0.5
2,216,318 - -1.8
2,216,318 - +0.5
2,216,318 - -0.2
2,216,318 - -0.2
2,216,508 + Dshi_2092 0.27 -2.2
2,216,556 + -1.2
2,216,785 + Dshi_2092 0.62 -0.2
2,216,891 - Dshi_2092 0.75 -0.6
2,217,301 + Dshi_2093 0.45 +0.3
2,217,328 - Dshi_2093 0.51 +0.4
2,217,371 + Dshi_2093 0.61 +0.2
2,217,425 - Dshi_2093 0.73 +1.0
2,217,499 - Dshi_2093 0.89 +0.7
2,217,575 + +0.6
2,217,735 - +0.3
2,217,798 + -0.4
2,217,890 + -0.0
2,217,922 + -1.2
2,217,931 - +0.4
2,217,958 - Dshi_2094 0.13 +0.1
2,217,975 - Dshi_2094 0.15 +0.3
2,218,018 - Dshi_2094 0.22 +0.8

Or see this region's nucleotide sequence