Experiment: m.b. Chlorite 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2090 and Dshi_2091 are separated by 52 nucleotides Dshi_2091 and Dshi_2092 are separated by 89 nucleotides Dshi_2092 and Dshi_2093 are separated by 15 nucleotides Dshi_2093 and Dshi_2094 are separated by 330 nucleotides
Dshi_2090: Dshi_2090 - Serine--glyoxylate transaminase (RefSeq), at 2,214,205 to 2,215,461
_2090
Dshi_2091: Dshi_2091 - glycosyl transferase family 2 (RefSeq), at 2,215,514 to 2,216,209
_2091
Dshi_2092: Dshi_2092 - glycine cleavage T protein (aminomethyl transferase) (RefSeq), at 2,216,299 to 2,217,084
_2092
Dshi_2093: Dshi_2093 - hypothetical protein (RefSeq), at 2,217,100 to 2,217,546
_2093
Dshi_2094: Dshi_2094 - translation elongation factor P (RefSeq), at 2,217,877 to 2,218,518
_2094
Position (kb)
2216
2217
2218 Strain fitness (log2 ratio)
-2
-1
0
1 at 2215.310 kb on + strand, within Dshi_2090 at 2215.336 kb on - strand at 2215.478 kb on - strand at 2215.497 kb on - strand at 2215.497 kb on - strand at 2215.511 kb on + strand at 2215.637 kb on - strand, within Dshi_2091 at 2215.705 kb on - strand at 2215.778 kb on - strand, within Dshi_2091 at 2215.785 kb on + strand, within Dshi_2091 at 2215.793 kb on - strand, within Dshi_2091 at 2215.828 kb on - strand, within Dshi_2091 at 2216.135 kb on - strand, within Dshi_2091 at 2216.147 kb on - strand at 2216.205 kb on + strand at 2216.213 kb on - strand at 2216.310 kb on + strand at 2216.318 kb on - strand at 2216.318 kb on - strand at 2216.318 kb on - strand at 2216.318 kb on - strand at 2216.318 kb on - strand at 2216.508 kb on + strand, within Dshi_2092 at 2216.556 kb on + strand at 2216.785 kb on + strand, within Dshi_2092 at 2216.891 kb on - strand, within Dshi_2092 at 2217.301 kb on + strand, within Dshi_2093 at 2217.328 kb on - strand, within Dshi_2093 at 2217.371 kb on + strand, within Dshi_2093 at 2217.425 kb on - strand, within Dshi_2093 at 2217.499 kb on - strand, within Dshi_2093 at 2217.575 kb on + strand at 2217.735 kb on - strand at 2217.798 kb on + strand at 2217.890 kb on + strand at 2217.922 kb on + strand at 2217.931 kb on - strand at 2217.958 kb on - strand, within Dshi_2094 at 2217.975 kb on - strand, within Dshi_2094 at 2218.018 kb on - strand, within Dshi_2094
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM remove 2,215,310 + Dshi_2090 0.88 +0.7 2,215,336 - -0.8 2,215,478 - -0.2 2,215,497 - +0.3 2,215,497 - -0.1 2,215,511 + +0.1 2,215,637 - Dshi_2091 0.18 -1.1 2,215,705 - -1.2 2,215,778 - Dshi_2091 0.38 +0.3 2,215,785 + Dshi_2091 0.39 -0.2 2,215,793 - Dshi_2091 0.40 -0.1 2,215,828 - Dshi_2091 0.45 +0.0 2,216,135 - Dshi_2091 0.89 +0.7 2,216,147 - -0.3 2,216,205 + -0.6 2,216,213 - -0.0 2,216,310 + +0.7 2,216,318 - -0.5 2,216,318 - -1.8 2,216,318 - +0.5 2,216,318 - -0.2 2,216,318 - -0.2 2,216,508 + Dshi_2092 0.27 -2.2 2,216,556 + -1.2 2,216,785 + Dshi_2092 0.62 -0.2 2,216,891 - Dshi_2092 0.75 -0.6 2,217,301 + Dshi_2093 0.45 +0.3 2,217,328 - Dshi_2093 0.51 +0.4 2,217,371 + Dshi_2093 0.61 +0.2 2,217,425 - Dshi_2093 0.73 +1.0 2,217,499 - Dshi_2093 0.89 +0.7 2,217,575 + +0.6 2,217,735 - +0.3 2,217,798 + -0.4 2,217,890 + -0.0 2,217,922 + -1.2 2,217,931 - +0.4 2,217,958 - Dshi_2094 0.13 +0.1 2,217,975 - Dshi_2094 0.15 +0.3 2,218,018 - Dshi_2094 0.22 +0.8
Or see this region's nucleotide sequence