Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2065

Experiment: m.b. Chlorite 0.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_2063 and Dshi_2064 are separated by 32 nucleotidesDshi_2064 and Dshi_2065 are separated by 75 nucleotidesDshi_2065 and Dshi_2066 are separated by 5 nucleotidesDshi_2066 and Dshi_2067 are separated by 111 nucleotides Dshi_2063: Dshi_2063 - von Willebrand factor type A (RefSeq), at 2,185,051 to 2,185,806 _2063 Dshi_2064: Dshi_2064 - GCN5-related N-acetyltransferase (RefSeq), at 2,185,839 to 2,186,339 _2064 Dshi_2065: Dshi_2065 - flavin reductase-like, FMN-binding (RefSeq), at 2,186,415 to 2,187,020 _2065 Dshi_2066: Dshi_2066 - hypothetical protein (RefSeq), at 2,187,026 to 2,187,301 _2066 Dshi_2067: Dshi_2067 - sulphate transporter (RefSeq), at 2,187,413 to 2,189,017 _2067 Position (kb) 2186 2187 2188Strain fitness (log2 ratio) -1 0 1at 2185.697 kb on - strand, within Dshi_2063at 2185.730 kb on + strand, within Dshi_2063at 2185.792 kb on - strandat 2186.373 kb on + strandat 2186.417 kb on - strandat 2186.677 kb on + strand, within Dshi_2065at 2186.683 kb on - strand, within Dshi_2065at 2186.714 kb on + strand, within Dshi_2065at 2187.093 kb on + strand, within Dshi_2066at 2187.363 kb on + strandat 2187.383 kb on - strandat 2187.445 kb on - strandat 2187.515 kb on - strandat 2187.557 kb on + strandat 2187.651 kb on + strand, within Dshi_2067at 2187.658 kb on - strand, within Dshi_2067at 2187.756 kb on + strand, within Dshi_2067at 2187.783 kb on + strand, within Dshi_2067at 2187.830 kb on - strand, within Dshi_2067at 2187.876 kb on + strand, within Dshi_2067at 2187.884 kb on - strand, within Dshi_2067

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
remove
2,185,697 - Dshi_2063 0.85 +0.0
2,185,730 + Dshi_2063 0.90 +0.6
2,185,792 - -1.3
2,186,373 + -0.7
2,186,417 - -0.2
2,186,677 + Dshi_2065 0.43 +0.1
2,186,683 - Dshi_2065 0.44 -1.0
2,186,714 + Dshi_2065 0.49 +0.4
2,187,093 + Dshi_2066 0.24 +1.2
2,187,363 + -1.1
2,187,383 - +0.0
2,187,445 - +0.7
2,187,515 - -0.2
2,187,557 + +0.2
2,187,651 + Dshi_2067 0.15 +0.8
2,187,658 - Dshi_2067 0.15 -0.5
2,187,756 + Dshi_2067 0.21 -0.2
2,187,783 + Dshi_2067 0.23 +0.4
2,187,830 - Dshi_2067 0.26 -0.4
2,187,876 + Dshi_2067 0.29 +0.5
2,187,884 - Dshi_2067 0.29 +0.3

Or see this region's nucleotide sequence