Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2024

Experiment: m.b. Chlorite 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2023 and Dshi_2024 are separated by 260 nucleotidesDshi_2024 and Dshi_2025 are separated by 6 nucleotidesDshi_2025 and Dshi_2026 are separated by 61 nucleotides Dshi_2023: Dshi_2023 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 2,142,820 to 2,144,499 _2023 Dshi_2024: Dshi_2024 - protein of unknown function DUF81 (RefSeq), at 2,144,760 to 2,145,515 _2024 Dshi_2025: Dshi_2025 - protein of unknown function DUF1498 (RefSeq), at 2,145,522 to 2,146,214 _2025 Dshi_2026: Dshi_2026 - LamB/YcsF family protein (RefSeq), at 2,146,276 to 2,147,046 _2026 Position (kb) 2144 2145 2146Strain fitness (log2 ratio) -1 0 1at 2144.661 kb on + strandat 2144.669 kb on - strandat 2144.918 kb on - strand, within Dshi_2024at 2145.053 kb on - strand, within Dshi_2024at 2145.087 kb on - strand, within Dshi_2024at 2145.144 kb on + strand, within Dshi_2024at 2145.243 kb on + strand, within Dshi_2024at 2145.571 kb on + strandat 2145.583 kb on + strandat 2145.611 kb on - strand, within Dshi_2025at 2145.732 kb on - strand, within Dshi_2025at 2145.768 kb on - strand, within Dshi_2025at 2145.848 kb on - strand, within Dshi_2025at 2145.954 kb on + strand, within Dshi_2025at 2145.965 kb on - strand, within Dshi_2025at 2146.326 kb on - strandat 2146.342 kb on + strandat 2146.355 kb on + strand, within Dshi_2026at 2146.385 kb on - strand, within Dshi_2026at 2146.436 kb on + strand, within Dshi_2026at 2146.436 kb on + strand, within Dshi_2026

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
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2,144,661 + +0.1
2,144,669 - +0.3
2,144,918 - Dshi_2024 0.21 -0.5
2,145,053 - Dshi_2024 0.39 -0.5
2,145,087 - Dshi_2024 0.43 -0.2
2,145,144 + Dshi_2024 0.51 -0.2
2,145,243 + Dshi_2024 0.64 -1.4
2,145,571 + -0.0
2,145,583 + -0.7
2,145,611 - Dshi_2025 0.13 -0.8
2,145,732 - Dshi_2025 0.30 -0.5
2,145,768 - Dshi_2025 0.35 -0.7
2,145,848 - Dshi_2025 0.47 +0.4
2,145,954 + Dshi_2025 0.62 +0.3
2,145,965 - Dshi_2025 0.64 -0.8
2,146,326 - -0.4
2,146,342 + -0.1
2,146,355 + Dshi_2026 0.10 +0.5
2,146,385 - Dshi_2026 0.14 +0.5
2,146,436 + Dshi_2026 0.21 +0.3
2,146,436 + Dshi_2026 0.21 +1.1

Or see this region's nucleotide sequence