Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1972

Experiment: m.b. Chlorite 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1971 and Dshi_1972 are separated by 426 nucleotidesDshi_1972 and Dshi_1973 are separated by 59 nucleotides Dshi_1971: Dshi_1971 - TRAP dicarboxylate transporter- DctP subunit (RefSeq), at 2,084,030 to 2,085,007 _1971 Dshi_1972: Dshi_1972 - GntR domain protein (RefSeq), at 2,085,434 to 2,086,216 _1972 Dshi_1973: Dshi_1973 - ATPase associated with various cellular activities AAA_3 (RefSeq), at 2,086,276 to 2,087,394 _1973 Position (kb) 2085 2086 2087Strain fitness (log2 ratio) -2 -1 0 1at 2084.465 kb on + strand, within Dshi_1971at 2084.685 kb on - strand, within Dshi_1971at 2084.751 kb on - strand, within Dshi_1971at 2084.751 kb on - strand, within Dshi_1971at 2084.763 kb on + strand, within Dshi_1971at 2084.771 kb on + strand, within Dshi_1971at 2084.771 kb on - strand, within Dshi_1971at 2084.841 kb on - strand, within Dshi_1971at 2084.915 kb on + strandat 2085.031 kb on - strandat 2085.121 kb on + strandat 2085.502 kb on + strandat 2085.576 kb on + strand, within Dshi_1972at 2085.668 kb on - strand, within Dshi_1972at 2085.857 kb on + strand, within Dshi_1972at 2085.922 kb on - strand, within Dshi_1972at 2086.196 kb on + strandat 2086.243 kb on + strandat 2086.248 kb on + strandat 2086.251 kb on - strandat 2086.469 kb on + strand, within Dshi_1973at 2086.510 kb on - strand, within Dshi_1973at 2086.567 kb on - strand, within Dshi_1973at 2086.578 kb on - strand, within Dshi_1973at 2086.708 kb on + strand, within Dshi_1973at 2086.786 kb on + strand, within Dshi_1973at 2086.875 kb on - strand, within Dshi_1973at 2086.888 kb on + strand, within Dshi_1973at 2086.896 kb on - strand, within Dshi_1973at 2086.968 kb on - strand, within Dshi_1973at 2086.968 kb on - strand, within Dshi_1973at 2087.071 kb on - strand, within Dshi_1973

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
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2,084,465 + Dshi_1971 0.44 -0.3
2,084,685 - Dshi_1971 0.67 +0.6
2,084,751 - Dshi_1971 0.74 -0.4
2,084,751 - Dshi_1971 0.74 +0.3
2,084,763 + Dshi_1971 0.75 +0.1
2,084,771 + Dshi_1971 0.76 -0.9
2,084,771 - Dshi_1971 0.76 +0.4
2,084,841 - Dshi_1971 0.83 +1.0
2,084,915 + +0.2
2,085,031 - -1.4
2,085,121 + -0.6
2,085,502 + -1.8
2,085,576 + Dshi_1972 0.18 -0.2
2,085,668 - Dshi_1972 0.30 -1.7
2,085,857 + Dshi_1972 0.54 -0.6
2,085,922 - Dshi_1972 0.62 -0.2
2,086,196 + -0.7
2,086,243 + +0.3
2,086,248 + -1.0
2,086,251 - -0.2
2,086,469 + Dshi_1973 0.17 +1.1
2,086,510 - Dshi_1973 0.21 +0.5
2,086,567 - Dshi_1973 0.26 -0.1
2,086,578 - Dshi_1973 0.27 +0.7
2,086,708 + Dshi_1973 0.39 +0.6
2,086,786 + Dshi_1973 0.46 +0.3
2,086,875 - Dshi_1973 0.54 +0.7
2,086,888 + Dshi_1973 0.55 +0.7
2,086,896 - Dshi_1973 0.55 -0.1
2,086,968 - Dshi_1973 0.62 +0.2
2,086,968 - Dshi_1973 0.62 +0.0
2,087,071 - Dshi_1973 0.71 -0.1

Or see this region's nucleotide sequence