Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1954

Experiment: m.b. Chlorite 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1953 and Dshi_1954 are separated by 31 nucleotidesDshi_1954 and Dshi_1955 are separated by 4 nucleotides Dshi_1953: Dshi_1953 - putative secreted hydrolase (RefSeq), at 2,046,386 to 2,047,312 _1953 Dshi_1954: Dshi_1954 - short-chain dehydrogenase/reductase SDR (RefSeq), at 2,047,344 to 2,048,147 _1954 Dshi_1955: Dshi_1955 - short-chain dehydrogenase/reductase SDR (RefSeq), at 2,048,152 to 2,049,948 _1955 Position (kb) 2047 2048 2049Strain fitness (log2 ratio) -2 -1 0 1at 2046.381 kb on + strandat 2046.412 kb on - strandat 2046.449 kb on + strandat 2046.458 kb on - strandat 2046.680 kb on - strand, within Dshi_1953at 2046.680 kb on - strand, within Dshi_1953at 2046.695 kb on - strand, within Dshi_1953at 2046.768 kb on - strand, within Dshi_1953at 2046.768 kb on - strand, within Dshi_1953at 2046.869 kb on - strand, within Dshi_1953at 2046.874 kb on - strand, within Dshi_1953at 2046.930 kb on + strandat 2046.963 kb on + strand, within Dshi_1953at 2047.026 kb on - strand, within Dshi_1953at 2047.068 kb on + strand, within Dshi_1953at 2047.147 kb on - strand, within Dshi_1953at 2047.490 kb on + strand, within Dshi_1954at 2047.564 kb on - strand, within Dshi_1954at 2047.856 kb on - strandat 2047.856 kb on - strand, within Dshi_1954at 2047.888 kb on + strand, within Dshi_1954at 2048.133 kb on + strandat 2048.136 kb on - strandat 2048.218 kb on - strandat 2048.270 kb on + strandat 2048.288 kb on - strandat 2048.288 kb on - strandat 2048.427 kb on + strand, within Dshi_1955at 2048.530 kb on - strand, within Dshi_1955at 2048.562 kb on + strand, within Dshi_1955at 2048.729 kb on - strand, within Dshi_1955at 2048.852 kb on + strand, within Dshi_1955at 2048.933 kb on + strand, within Dshi_1955at 2048.973 kb on + strand, within Dshi_1955

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
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2,046,381 + -0.4
2,046,412 - +0.3
2,046,449 + +0.4
2,046,458 - +0.7
2,046,680 - Dshi_1953 0.32 -0.8
2,046,680 - Dshi_1953 0.32 +0.3
2,046,695 - Dshi_1953 0.33 +0.4
2,046,768 - Dshi_1953 0.41 +1.2
2,046,768 - Dshi_1953 0.41 +0.1
2,046,869 - Dshi_1953 0.52 +0.5
2,046,874 - Dshi_1953 0.53 -0.0
2,046,930 + -1.2
2,046,963 + Dshi_1953 0.62 +1.5
2,047,026 - Dshi_1953 0.69 +0.5
2,047,068 + Dshi_1953 0.74 +0.3
2,047,147 - Dshi_1953 0.82 +0.4
2,047,490 + Dshi_1954 0.18 +0.2
2,047,564 - Dshi_1954 0.27 +1.4
2,047,856 - -0.8
2,047,856 - Dshi_1954 0.64 +1.2
2,047,888 + Dshi_1954 0.68 +0.9
2,048,133 + -0.2
2,048,136 - -0.1
2,048,218 - +0.2
2,048,270 + +0.1
2,048,288 - +1.1
2,048,288 - -0.0
2,048,427 + Dshi_1955 0.15 +0.4
2,048,530 - Dshi_1955 0.21 +0.5
2,048,562 + Dshi_1955 0.23 +0.8
2,048,729 - Dshi_1955 0.32 -1.8
2,048,852 + Dshi_1955 0.39 +0.6
2,048,933 + Dshi_1955 0.43 +0.1
2,048,973 + Dshi_1955 0.46 +0.1

Or see this region's nucleotide sequence