Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1880

Experiment: m.b. Chlorite 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1879 and Dshi_1880 are separated by 3 nucleotidesDshi_1880 and Dshi_1881 overlap by 1 nucleotides Dshi_1879: Dshi_1879 - hypothetical protein (RefSeq), at 1,957,234 to 1,958,421 _1879 Dshi_1880: Dshi_1880 - hypothetical protein (RefSeq), at 1,958,425 to 1,958,592 _1880 Dshi_1881: Dshi_1881 - hypothetical protein (RefSeq), at 1,958,592 to 1,959,968 _1881 Position (kb) 1958 1959Strain fitness (log2 ratio) -2 -1 0 1 2at 1957.484 kb on - strand, within Dshi_1879at 1957.541 kb on - strand, within Dshi_1879at 1957.551 kb on + strand, within Dshi_1879at 1957.559 kb on - strand, within Dshi_1879at 1957.616 kb on + strand, within Dshi_1879at 1957.654 kb on - strand, within Dshi_1879at 1957.654 kb on - strand, within Dshi_1879at 1957.654 kb on - strand, within Dshi_1879at 1957.671 kb on + strand, within Dshi_1879at 1957.679 kb on + strand, within Dshi_1879at 1957.683 kb on + strand, within Dshi_1879at 1957.688 kb on - strand, within Dshi_1879at 1957.885 kb on + strand, within Dshi_1879at 1958.183 kb on - strand, within Dshi_1879at 1958.204 kb on - strand, within Dshi_1879at 1958.219 kb on - strand, within Dshi_1879at 1958.305 kb on - strandat 1958.305 kb on - strandat 1958.574 kb on - strand, within Dshi_1880at 1958.574 kb on - strand, within Dshi_1880at 1958.577 kb on - strandat 1958.587 kb on - strandat 1958.721 kb on + strandat 1959.228 kb on - strand, within Dshi_1881at 1959.286 kb on - strand, within Dshi_1881at 1959.287 kb on + strand, within Dshi_1881

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
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1,957,484 - Dshi_1879 0.21 -0.5
1,957,541 - Dshi_1879 0.26 +0.9
1,957,551 + Dshi_1879 0.27 -0.4
1,957,559 - Dshi_1879 0.27 -0.0
1,957,616 + Dshi_1879 0.32 +1.1
1,957,654 - Dshi_1879 0.35 +0.6
1,957,654 - Dshi_1879 0.35 -0.5
1,957,654 - Dshi_1879 0.35 -2.2
1,957,671 + Dshi_1879 0.37 -0.0
1,957,679 + Dshi_1879 0.37 -0.9
1,957,683 + Dshi_1879 0.38 -1.2
1,957,688 - Dshi_1879 0.38 +0.4
1,957,885 + Dshi_1879 0.55 +0.8
1,958,183 - Dshi_1879 0.80 +0.9
1,958,204 - Dshi_1879 0.82 -0.4
1,958,219 - Dshi_1879 0.83 +0.8
1,958,305 - -0.1
1,958,305 - -1.1
1,958,574 - Dshi_1880 0.89 -1.1
1,958,574 - Dshi_1880 0.89 -0.6
1,958,577 - +1.8
1,958,587 - -0.6
1,958,721 + +0.1
1,959,228 - Dshi_1881 0.46 -1.3
1,959,286 - Dshi_1881 0.50 -1.2
1,959,287 + Dshi_1881 0.50 +0.0

Or see this region's nucleotide sequence