Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1793

Experiment: m.b. Chlorite 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1791 and Dshi_1792 overlap by 4 nucleotidesDshi_1792 and Dshi_1793 are separated by 62 nucleotidesDshi_1793 and Dshi_1794 are separated by 1 nucleotides Dshi_1791: Dshi_1791 - Lysine exporter protein (LYSE/YGGA) (RefSeq), at 1,862,057 to 1,862,668 _1791 Dshi_1792: Dshi_1792 - Lysine exporter protein (LYSE/YGGA) (RefSeq), at 1,862,665 to 1,863,276 _1792 Dshi_1793: Dshi_1793 - Xanthine phosphoribosyltransferase (RefSeq), at 1,863,339 to 1,863,842 _1793 Dshi_1794: Dshi_1794 - aminotransferase class I and II (RefSeq), at 1,863,844 to 1,865,025 _1794 Position (kb) 1863 1864Strain fitness (log2 ratio) -2 -1 0 1at 1862.431 kb on + strand, within Dshi_1791at 1862.439 kb on - strand, within Dshi_1791at 1862.511 kb on - strand, within Dshi_1791at 1862.540 kb on - strand, within Dshi_1791at 1862.768 kb on + strand, within Dshi_1792at 1863.005 kb on + strand, within Dshi_1792at 1863.092 kb on + strand, within Dshi_1792at 1863.182 kb on + strand, within Dshi_1792at 1863.190 kb on - strand, within Dshi_1792at 1863.193 kb on + strand, within Dshi_1792at 1863.238 kb on + strandat 1863.567 kb on - strand, within Dshi_1793at 1863.736 kb on - strand, within Dshi_1793at 1863.740 kb on + strand, within Dshi_1793at 1863.742 kb on - strand, within Dshi_1793at 1863.795 kb on + strandat 1863.803 kb on - strandat 1863.979 kb on - strand, within Dshi_1794at 1864.034 kb on - strand, within Dshi_1794at 1864.164 kb on - strand, within Dshi_1794at 1864.270 kb on - strand, within Dshi_1794at 1864.354 kb on + strand, within Dshi_1794at 1864.402 kb on - strand, within Dshi_1794at 1864.584 kb on + strand, within Dshi_1794at 1864.753 kb on + strand, within Dshi_1794at 1864.767 kb on + strand, within Dshi_1794

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
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1,862,431 + Dshi_1791 0.61 -0.6
1,862,439 - Dshi_1791 0.62 -1.0
1,862,511 - Dshi_1791 0.74 -0.8
1,862,540 - Dshi_1791 0.79 +0.2
1,862,768 + Dshi_1792 0.17 -0.1
1,863,005 + Dshi_1792 0.56 -0.0
1,863,092 + Dshi_1792 0.70 +0.0
1,863,182 + Dshi_1792 0.84 -0.4
1,863,190 - Dshi_1792 0.86 +0.0
1,863,193 + Dshi_1792 0.86 +0.2
1,863,238 + -0.2
1,863,567 - Dshi_1793 0.45 -2.0
1,863,736 - Dshi_1793 0.79 +0.4
1,863,740 + Dshi_1793 0.80 +1.5
1,863,742 - Dshi_1793 0.80 +0.5
1,863,795 + -0.2
1,863,803 - +0.6
1,863,979 - Dshi_1794 0.11 -0.2
1,864,034 - Dshi_1794 0.16 -0.0
1,864,164 - Dshi_1794 0.27 +1.6
1,864,270 - Dshi_1794 0.36 +1.4
1,864,354 + Dshi_1794 0.43 -0.8
1,864,402 - Dshi_1794 0.47 +0.7
1,864,584 + Dshi_1794 0.63 +0.4
1,864,753 + Dshi_1794 0.77 +0.1
1,864,767 + Dshi_1794 0.78 +0.0

Or see this region's nucleotide sequence