Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1766

Experiment: m.b. Chlorite 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1765 and Dshi_1766 are separated by 53 nucleotidesDshi_1766 and Dshi_1767 are separated by 150 nucleotidesDshi_1767 and Dshi_1768 are separated by 181 nucleotides Dshi_1765: Dshi_1765 - ABC transporter related (RefSeq), at 1,830,691 to 1,832,526 _1765 Dshi_1766: Dshi_1766 - peptidoglycan-binding LysM (RefSeq), at 1,832,580 to 1,834,175 _1766 Dshi_1767: Dshi_1767 - hypothetical protein (RefSeq), at 1,834,326 to 1,834,865 _1767 Dshi_1768: Dshi_1768 - 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase (RefSeq), at 1,835,047 to 1,835,688 _1768 Position (kb) 1832 1833 1834 1835Strain fitness (log2 ratio) -2 -1 0 1 2at 1831.629 kb on - strand, within Dshi_1765at 1831.674 kb on + strand, within Dshi_1765at 1831.675 kb on + strand, within Dshi_1765at 1831.687 kb on - strand, within Dshi_1765at 1831.753 kb on + strand, within Dshi_1765at 1831.834 kb on + strand, within Dshi_1765at 1831.933 kb on - strand, within Dshi_1765at 1831.978 kb on - strand, within Dshi_1765at 1832.007 kb on + strand, within Dshi_1765at 1832.072 kb on - strand, within Dshi_1765at 1832.082 kb on - strand, within Dshi_1765at 1832.586 kb on - strandat 1832.717 kb on + strandat 1833.165 kb on - strand, within Dshi_1766at 1833.175 kb on - strand, within Dshi_1766at 1833.433 kb on - strand, within Dshi_1766at 1834.343 kb on + strandat 1834.444 kb on + strand, within Dshi_1767at 1834.457 kb on - strand, within Dshi_1767at 1834.574 kb on + strand, within Dshi_1767at 1834.643 kb on - strand, within Dshi_1767at 1834.674 kb on + strand, within Dshi_1767at 1834.847 kb on - strandat 1834.947 kb on - strandat 1834.947 kb on - strandat 1834.963 kb on + strandat 1834.995 kb on + strandat 1835.037 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
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1,831,629 - Dshi_1765 0.51 -0.2
1,831,674 + Dshi_1765 0.54 -0.2
1,831,675 + Dshi_1765 0.54 -0.9
1,831,687 - Dshi_1765 0.54 +0.9
1,831,753 + Dshi_1765 0.58 -0.4
1,831,834 + Dshi_1765 0.62 +0.3
1,831,933 - Dshi_1765 0.68 -0.7
1,831,978 - Dshi_1765 0.70 +1.4
1,832,007 + Dshi_1765 0.72 -0.1
1,832,072 - Dshi_1765 0.75 -0.8
1,832,082 - Dshi_1765 0.76 -0.3
1,832,586 - +0.5
1,832,717 + -0.0
1,833,165 - Dshi_1766 0.37 -0.5
1,833,175 - Dshi_1766 0.37 -1.2
1,833,433 - Dshi_1766 0.53 -1.9
1,834,343 + -0.3
1,834,444 + Dshi_1767 0.22 +0.3
1,834,457 - Dshi_1767 0.24 +0.7
1,834,574 + Dshi_1767 0.46 -0.1
1,834,643 - Dshi_1767 0.59 -0.4
1,834,674 + Dshi_1767 0.64 +0.4
1,834,847 - +0.2
1,834,947 - -0.2
1,834,947 - +2.4
1,834,963 + -0.6
1,834,995 + -0.9
1,835,037 - +1.0

Or see this region's nucleotide sequence