Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1703

Experiment: m.b. Chlorite 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1701 and Dshi_1702 overlap by 4 nucleotidesDshi_1702 and Dshi_1703 overlap by 4 nucleotidesDshi_1703 and Dshi_1704 are separated by 77 nucleotides Dshi_1701: Dshi_1701 - ABC-3 protein (RefSeq), at 1,770,402 to 1,771,202 _1701 Dshi_1702: Dshi_1702 - ABC transporter related (RefSeq), at 1,771,199 to 1,771,942 _1702 Dshi_1703: Dshi_1703 - putative ferric uptake regulator, Fur family (RefSeq), at 1,771,939 to 1,772,436 _1703 Dshi_1704: Dshi_1704 - periplasmic solute binding protein (RefSeq), at 1,772,514 to 1,773,584 _1704 Position (kb) 1771 1772 1773Strain fitness (log2 ratio) -2 -1 0 1at 1771.164 kb on + strandat 1771.265 kb on - strandat 1771.298 kb on - strand, within Dshi_1702at 1771.330 kb on - strand, within Dshi_1702at 1771.509 kb on - strand, within Dshi_1702at 1771.563 kb on + strand, within Dshi_1702at 1771.563 kb on + strand, within Dshi_1702at 1771.599 kb on - strand, within Dshi_1702at 1771.674 kb on + strand, within Dshi_1702at 1771.822 kb on - strand, within Dshi_1702at 1771.891 kb on - strandat 1771.891 kb on - strandat 1771.891 kb on - strandat 1771.891 kb on - strandat 1771.891 kb on - strandat 1771.891 kb on - strandat 1771.977 kb on - strandat 1772.132 kb on - strand, within Dshi_1703at 1772.137 kb on - strandat 1772.161 kb on + strand, within Dshi_1703at 1772.523 kb on + strandat 1772.568 kb on + strandat 1772.751 kb on + strand, within Dshi_1704at 1772.792 kb on - strand, within Dshi_1704at 1772.807 kb on - strand, within Dshi_1704at 1772.822 kb on + strand, within Dshi_1704at 1773.205 kb on - strandat 1773.314 kb on - strand, within Dshi_1704at 1773.364 kb on - strand, within Dshi_1704at 1773.392 kb on + strand, within Dshi_1704

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
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1,771,164 + +0.3
1,771,265 - +0.1
1,771,298 - Dshi_1702 0.13 -0.2
1,771,330 - Dshi_1702 0.18 -0.3
1,771,509 - Dshi_1702 0.42 +0.1
1,771,563 + Dshi_1702 0.49 -0.5
1,771,563 + Dshi_1702 0.49 -1.2
1,771,599 - Dshi_1702 0.54 +0.2
1,771,674 + Dshi_1702 0.64 +0.6
1,771,822 - Dshi_1702 0.84 -1.8
1,771,891 - +1.3
1,771,891 - +0.9
1,771,891 - -0.2
1,771,891 - -0.1
1,771,891 - +0.1
1,771,891 - -1.3
1,771,977 - +0.0
1,772,132 - Dshi_1703 0.39 -0.9
1,772,137 - -0.2
1,772,161 + Dshi_1703 0.45 -0.4
1,772,523 + -0.2
1,772,568 + +0.3
1,772,751 + Dshi_1704 0.22 +0.0
1,772,792 - Dshi_1704 0.26 +0.1
1,772,807 - Dshi_1704 0.27 +0.2
1,772,822 + Dshi_1704 0.29 -0.7
1,773,205 - -1.8
1,773,314 - Dshi_1704 0.75 +0.8
1,773,364 - Dshi_1704 0.79 +1.5
1,773,392 + Dshi_1704 0.82 -0.3

Or see this region's nucleotide sequence