Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1620

Experiment: m.b. Chlorite 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1619 and Dshi_1620 are separated by 297 nucleotidesDshi_1620 and Dshi_1621 are separated by 4 nucleotides Dshi_1619: Dshi_1619 - Peptidoglycan-binding domain 1 protein (RefSeq), at 1,683,367 to 1,684,977 _1619 Dshi_1620: Dshi_1620 - protein of unknown function DUF882 (RefSeq), at 1,685,275 to 1,685,844 _1620 Dshi_1621: Dshi_1621 - PfkB domain protein (RefSeq), at 1,685,849 to 1,686,799 _1621 Position (kb) 1685 1686Strain fitness (log2 ratio) -2 -1 0 1at 1684.375 kb on - strand, within Dshi_1619at 1684.375 kb on - strand, within Dshi_1619at 1684.375 kb on - strand, within Dshi_1619at 1684.382 kb on - strand, within Dshi_1619at 1684.422 kb on - strand, within Dshi_1619at 1684.437 kb on + strand, within Dshi_1619at 1684.502 kb on + strand, within Dshi_1619at 1684.520 kb on - strand, within Dshi_1619at 1684.676 kb on + strand, within Dshi_1619at 1684.684 kb on - strand, within Dshi_1619at 1684.739 kb on + strand, within Dshi_1619at 1684.808 kb on + strand, within Dshi_1619at 1684.860 kb on + strandat 1684.860 kb on + strandat 1684.934 kb on + strandat 1684.934 kb on + strandat 1684.942 kb on - strandat 1684.951 kb on + strandat 1684.952 kb on + strandat 1684.959 kb on + strandat 1684.967 kb on - strandat 1684.987 kb on - strandat 1685.212 kb on + strandat 1685.224 kb on + strandat 1685.232 kb on - strandat 1685.232 kb on - strandat 1685.232 kb on - strandat 1685.238 kb on + strandat 1685.248 kb on + strandat 1685.248 kb on + strandat 1685.248 kb on + strandat 1685.256 kb on - strandat 1685.272 kb on + strandat 1685.283 kb on + strandat 1685.291 kb on - strandat 1685.343 kb on - strand, within Dshi_1620at 1685.363 kb on - strand, within Dshi_1620at 1685.368 kb on + strand, within Dshi_1620at 1685.439 kb on + strand, within Dshi_1620at 1685.457 kb on + strand, within Dshi_1620at 1685.459 kb on - strand, within Dshi_1620at 1685.459 kb on - strand, within Dshi_1620at 1685.491 kb on - strand, within Dshi_1620at 1685.877 kb on + strandat 1685.984 kb on - strand, within Dshi_1621at 1686.060 kb on - strand, within Dshi_1621at 1686.069 kb on + strand, within Dshi_1621at 1686.077 kb on - strand, within Dshi_1621at 1686.077 kb on - strand, within Dshi_1621at 1686.162 kb on + strand, within Dshi_1621at 1686.222 kb on + strand, within Dshi_1621at 1686.278 kb on - strand, within Dshi_1621at 1686.306 kb on - strand, within Dshi_1621at 1686.369 kb on - strand, within Dshi_1621at 1686.408 kb on + strand, within Dshi_1621at 1686.485 kb on + strand, within Dshi_1621at 1686.587 kb on - strand, within Dshi_1621at 1686.609 kb on - strand, within Dshi_1621at 1686.609 kb on - strand, within Dshi_1621at 1686.609 kb on - strand, within Dshi_1621at 1686.653 kb on + strand, within Dshi_1621at 1686.686 kb on - strand, within Dshi_1621at 1686.703 kb on + strand, within Dshi_1621at 1686.745 kb on - strandat 1686.758 kb on + strandat 1686.819 kb on - strandat 1686.824 kb on - strandat 1686.824 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
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1,684,375 - Dshi_1619 0.63 -1.3
1,684,375 - Dshi_1619 0.63 +0.3
1,684,375 - Dshi_1619 0.63 -0.7
1,684,382 - Dshi_1619 0.63 +1.0
1,684,422 - Dshi_1619 0.65 +0.4
1,684,437 + Dshi_1619 0.66 +0.5
1,684,502 + Dshi_1619 0.70 -1.0
1,684,520 - Dshi_1619 0.72 +0.4
1,684,676 + Dshi_1619 0.81 +0.8
1,684,684 - Dshi_1619 0.82 -1.2
1,684,739 + Dshi_1619 0.85 +1.5
1,684,808 + Dshi_1619 0.89 +1.2
1,684,860 + +0.4
1,684,860 + -0.8
1,684,934 + -1.6
1,684,934 + -0.7
1,684,942 - -0.1
1,684,951 + -0.2
1,684,952 + +0.3
1,684,959 + -0.9
1,684,967 - -0.6
1,684,987 - +0.5
1,685,212 + +1.6
1,685,224 + -0.5
1,685,232 - +0.4
1,685,232 - -0.4
1,685,232 - -0.5
1,685,238 + -0.5
1,685,248 + -0.6
1,685,248 + -1.4
1,685,248 + +1.5
1,685,256 - +0.0
1,685,272 + -0.4
1,685,283 + -0.8
1,685,291 - +0.8
1,685,343 - Dshi_1620 0.12 -1.0
1,685,363 - Dshi_1620 0.15 -2.0
1,685,368 + Dshi_1620 0.16 +0.2
1,685,439 + Dshi_1620 0.29 -1.2
1,685,457 + Dshi_1620 0.32 -0.8
1,685,459 - Dshi_1620 0.32 -0.5
1,685,459 - Dshi_1620 0.32 -0.2
1,685,491 - Dshi_1620 0.38 -0.6
1,685,877 + +1.0
1,685,984 - Dshi_1621 0.14 -1.2
1,686,060 - Dshi_1621 0.22 -0.2
1,686,069 + Dshi_1621 0.23 -0.3
1,686,077 - Dshi_1621 0.24 +1.0
1,686,077 - Dshi_1621 0.24 +1.1
1,686,162 + Dshi_1621 0.33 +0.3
1,686,222 + Dshi_1621 0.39 +0.8
1,686,278 - Dshi_1621 0.45 -0.8
1,686,306 - Dshi_1621 0.48 +0.5
1,686,369 - Dshi_1621 0.55 -0.2
1,686,408 + Dshi_1621 0.59 -0.2
1,686,485 + Dshi_1621 0.67 +0.0
1,686,587 - Dshi_1621 0.78 -0.1
1,686,609 - Dshi_1621 0.80 +0.4
1,686,609 - Dshi_1621 0.80 -1.2
1,686,609 - Dshi_1621 0.80 -0.1
1,686,653 + Dshi_1621 0.85 +1.0
1,686,686 - Dshi_1621 0.88 +0.5
1,686,703 + Dshi_1621 0.90 +0.3
1,686,745 - -0.2
1,686,758 + -0.6
1,686,819 - -1.1
1,686,824 - -0.5
1,686,824 - -0.0

Or see this region's nucleotide sequence