Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1599

Experiment: m.b. Chlorite 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1597 and Dshi_1598 overlap by 4 nucleotidesDshi_1598 and Dshi_1599 overlap by 4 nucleotidesDshi_1599 and Dshi_1600 are separated by 115 nucleotidesDshi_1600 and Dshi_1601 are separated by 146 nucleotides Dshi_1597: Dshi_1597 - ABC transporter related (RefSeq), at 1,662,856 to 1,663,923 _1597 Dshi_1598: Dshi_1598 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 1,663,920 to 1,664,726 _1598 Dshi_1599: Dshi_1599 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 1,664,723 to 1,665,604 _1599 Dshi_1600: Dshi_1600 - Antibiotic biosynthesis monooxygenase (RefSeq), at 1,665,720 to 1,666,031 _1600 Dshi_1601: Dshi_1601 - ribosomal protein S9 (RefSeq), at 1,666,178 to 1,666,672 _1601 Position (kb) 1664 1665 1666Strain fitness (log2 ratio) -1 0 1at 1663.818 kb on - strandat 1663.914 kb on - strandat 1664.096 kb on + strand, within Dshi_1598at 1664.579 kb on + strand, within Dshi_1598at 1664.684 kb on - strandat 1664.910 kb on - strand, within Dshi_1599at 1665.037 kb on - strand, within Dshi_1599at 1665.337 kb on + strand, within Dshi_1599at 1665.344 kb on + strand, within Dshi_1599at 1665.409 kb on - strand, within Dshi_1599at 1665.643 kb on + strandat 1665.798 kb on + strand, within Dshi_1600at 1665.932 kb on + strand, within Dshi_1600at 1666.021 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
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1,663,818 - -0.0
1,663,914 - -0.2
1,664,096 + Dshi_1598 0.22 +0.8
1,664,579 + Dshi_1598 0.82 -0.5
1,664,684 - -0.2
1,664,910 - Dshi_1599 0.21 -1.1
1,665,037 - Dshi_1599 0.36 -0.8
1,665,337 + Dshi_1599 0.70 +0.7
1,665,344 + Dshi_1599 0.70 -1.5
1,665,409 - Dshi_1599 0.78 +0.2
1,665,643 + -0.2
1,665,798 + Dshi_1600 0.25 -1.0
1,665,932 + Dshi_1600 0.68 -0.3
1,666,021 - -0.3

Or see this region's nucleotide sequence