Experiment: m.b. Chlorite 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1595 and Dshi_1596 overlap by 8 nucleotides Dshi_1596 and Dshi_1597 are separated by 14 nucleotides Dshi_1597 and Dshi_1598 overlap by 4 nucleotides Dshi_1598 and Dshi_1599 overlap by 4 nucleotides
Dshi_1595: Dshi_1595 - protein of unknown function DUF344 (RefSeq), at 1,661,362 to 1,662,231
_1595
Dshi_1596: Dshi_1596 - transcriptional regulator, TetR family (RefSeq), at 1,662,224 to 1,662,841
_1596
Dshi_1597: Dshi_1597 - ABC transporter related (RefSeq), at 1,662,856 to 1,663,923
_1597
Dshi_1598: Dshi_1598 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 1,663,920 to 1,664,726
_1598
Dshi_1599: Dshi_1599 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 1,664,723 to 1,665,604
_1599
Position (kb)
1662
1663
1664 Strain fitness (log2 ratio)
-1
0
1 at 1661.896 kb on - strand, within Dshi_1595 at 1662.146 kb on - strand at 1662.172 kb on - strand at 1662.206 kb on - strand at 1662.312 kb on + strand, within Dshi_1596 at 1662.474 kb on - strand, within Dshi_1596 at 1662.474 kb on - strand, within Dshi_1596 at 1662.497 kb on + strand, within Dshi_1596 at 1662.579 kb on + strand, within Dshi_1596 at 1662.625 kb on - strand, within Dshi_1596 at 1662.625 kb on - strand, within Dshi_1596 at 1662.935 kb on + strand at 1663.045 kb on - strand, within Dshi_1597 at 1663.146 kb on - strand, within Dshi_1597 at 1663.324 kb on + strand, within Dshi_1597 at 1663.444 kb on - strand, within Dshi_1597 at 1663.511 kb on - strand, within Dshi_1597 at 1663.602 kb on + strand, within Dshi_1597 at 1663.610 kb on - strand, within Dshi_1597 at 1663.818 kb on - strand at 1663.914 kb on - strand at 1664.096 kb on + strand, within Dshi_1598 at 1664.579 kb on + strand, within Dshi_1598 at 1664.684 kb on - strand at 1664.910 kb on - strand, within Dshi_1599
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM remove 1,661,896 - Dshi_1595 0.61 -0.4 1,662,146 - -0.7 1,662,172 - -0.7 1,662,206 - -0.5 1,662,312 + Dshi_1596 0.14 -1.2 1,662,474 - Dshi_1596 0.40 -1.1 1,662,474 - Dshi_1596 0.40 -0.6 1,662,497 + Dshi_1596 0.44 -1.5 1,662,579 + Dshi_1596 0.57 -0.0 1,662,625 - Dshi_1596 0.65 -1.4 1,662,625 - Dshi_1596 0.65 -1.2 1,662,935 + +0.4 1,663,045 - Dshi_1597 0.18 -1.4 1,663,146 - Dshi_1597 0.27 -1.5 1,663,324 + Dshi_1597 0.44 -0.7 1,663,444 - Dshi_1597 0.55 -0.9 1,663,511 - Dshi_1597 0.61 +0.3 1,663,602 + Dshi_1597 0.70 -1.4 1,663,610 - Dshi_1597 0.71 -0.0 1,663,818 - -0.0 1,663,914 - -0.2 1,664,096 + Dshi_1598 0.22 +0.8 1,664,579 + Dshi_1598 0.82 -0.5 1,664,684 - -0.2 1,664,910 - Dshi_1599 0.21 -1.1
Or see this region's nucleotide sequence