Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1597

Experiment: m.b. Chlorite 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1595 and Dshi_1596 overlap by 8 nucleotidesDshi_1596 and Dshi_1597 are separated by 14 nucleotidesDshi_1597 and Dshi_1598 overlap by 4 nucleotidesDshi_1598 and Dshi_1599 overlap by 4 nucleotides Dshi_1595: Dshi_1595 - protein of unknown function DUF344 (RefSeq), at 1,661,362 to 1,662,231 _1595 Dshi_1596: Dshi_1596 - transcriptional regulator, TetR family (RefSeq), at 1,662,224 to 1,662,841 _1596 Dshi_1597: Dshi_1597 - ABC transporter related (RefSeq), at 1,662,856 to 1,663,923 _1597 Dshi_1598: Dshi_1598 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 1,663,920 to 1,664,726 _1598 Dshi_1599: Dshi_1599 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 1,664,723 to 1,665,604 _1599 Position (kb) 1662 1663 1664Strain fitness (log2 ratio) -1 0 1at 1661.896 kb on - strand, within Dshi_1595at 1662.146 kb on - strandat 1662.172 kb on - strandat 1662.206 kb on - strandat 1662.312 kb on + strand, within Dshi_1596at 1662.474 kb on - strand, within Dshi_1596at 1662.474 kb on - strand, within Dshi_1596at 1662.497 kb on + strand, within Dshi_1596at 1662.579 kb on + strand, within Dshi_1596at 1662.625 kb on - strand, within Dshi_1596at 1662.625 kb on - strand, within Dshi_1596at 1662.935 kb on + strandat 1663.045 kb on - strand, within Dshi_1597at 1663.146 kb on - strand, within Dshi_1597at 1663.324 kb on + strand, within Dshi_1597at 1663.444 kb on - strand, within Dshi_1597at 1663.511 kb on - strand, within Dshi_1597at 1663.602 kb on + strand, within Dshi_1597at 1663.610 kb on - strand, within Dshi_1597at 1663.818 kb on - strandat 1663.914 kb on - strandat 1664.096 kb on + strand, within Dshi_1598at 1664.579 kb on + strand, within Dshi_1598at 1664.684 kb on - strandat 1664.910 kb on - strand, within Dshi_1599

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
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1,661,896 - Dshi_1595 0.61 -0.4
1,662,146 - -0.7
1,662,172 - -0.7
1,662,206 - -0.5
1,662,312 + Dshi_1596 0.14 -1.2
1,662,474 - Dshi_1596 0.40 -1.1
1,662,474 - Dshi_1596 0.40 -0.6
1,662,497 + Dshi_1596 0.44 -1.5
1,662,579 + Dshi_1596 0.57 -0.0
1,662,625 - Dshi_1596 0.65 -1.4
1,662,625 - Dshi_1596 0.65 -1.2
1,662,935 + +0.4
1,663,045 - Dshi_1597 0.18 -1.4
1,663,146 - Dshi_1597 0.27 -1.5
1,663,324 + Dshi_1597 0.44 -0.7
1,663,444 - Dshi_1597 0.55 -0.9
1,663,511 - Dshi_1597 0.61 +0.3
1,663,602 + Dshi_1597 0.70 -1.4
1,663,610 - Dshi_1597 0.71 -0.0
1,663,818 - -0.0
1,663,914 - -0.2
1,664,096 + Dshi_1598 0.22 +0.8
1,664,579 + Dshi_1598 0.82 -0.5
1,664,684 - -0.2
1,664,910 - Dshi_1599 0.21 -1.1

Or see this region's nucleotide sequence