Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1561

Experiment: m.b. Chlorite 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1559 and Dshi_1560 are separated by 137 nucleotidesDshi_1560 and Dshi_1561 are separated by 132 nucleotidesDshi_1561 and Dshi_1562 are separated by 404 nucleotides Dshi_1559: Dshi_1559 - drug resistance transporter, Bcr/CflA subfamily (RefSeq), at 1,620,493 to 1,621,701 _1559 Dshi_1560: Dshi_1560 - hypothetical protein (RefSeq), at 1,621,839 to 1,622,270 _1560 Dshi_1561: Dshi_1561 - transcription-repair coupling factor (RefSeq), at 1,622,403 to 1,625,885 _1561 Dshi_1562: Dshi_1562 - hypothetical protein (RefSeq), at 1,626,290 to 1,626,820 _1562 Position (kb) 1622 1623 1624 1625 1626Strain fitness (log2 ratio) -1 0 1at 1621.638 kb on - strandat 1621.646 kb on - strandat 1621.824 kb on + strandat 1622.044 kb on + strand, within Dshi_1560at 1622.106 kb on + strand, within Dshi_1560at 1622.358 kb on + strandat 1622.467 kb on + strandat 1622.649 kb on - strandat 1622.670 kb on - strandat 1623.664 kb on + strand, within Dshi_1561at 1623.723 kb on + strand, within Dshi_1561at 1624.115 kb on + strand, within Dshi_1561at 1624.168 kb on - strand, within Dshi_1561at 1624.385 kb on + strand, within Dshi_1561at 1624.537 kb on + strand, within Dshi_1561at 1624.581 kb on - strand, within Dshi_1561at 1624.941 kb on + strand, within Dshi_1561at 1624.947 kb on - strand, within Dshi_1561at 1625.003 kb on + strand, within Dshi_1561at 1625.035 kb on + strand, within Dshi_1561at 1625.043 kb on - strand, within Dshi_1561at 1625.370 kb on - strand, within Dshi_1561at 1625.370 kb on - strand, within Dshi_1561at 1625.607 kb on + strandat 1625.838 kb on + strandat 1625.915 kb on + strandat 1625.985 kb on + strandat 1626.139 kb on + strandat 1626.383 kb on - strand, within Dshi_1562at 1626.468 kb on - strand, within Dshi_1562at 1626.561 kb on + strand, within Dshi_1562at 1626.584 kb on - strand, within Dshi_1562at 1626.592 kb on + strand, within Dshi_1562at 1626.592 kb on + strand, within Dshi_1562at 1626.629 kb on - strand, within Dshi_1562at 1626.659 kb on - strand, within Dshi_1562at 1626.684 kb on + strand, within Dshi_1562at 1626.732 kb on + strand, within Dshi_1562

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
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1,621,638 - +0.7
1,621,646 - +0.0
1,621,824 + +0.5
1,622,044 + Dshi_1560 0.47 +0.5
1,622,106 + Dshi_1560 0.62 +0.6
1,622,358 + -0.7
1,622,467 + +0.7
1,622,649 - +0.2
1,622,670 - -0.6
1,623,664 + Dshi_1561 0.36 -0.0
1,623,723 + Dshi_1561 0.38 -1.4
1,624,115 + Dshi_1561 0.49 -0.2
1,624,168 - Dshi_1561 0.51 -0.9
1,624,385 + Dshi_1561 0.57 -0.6
1,624,537 + Dshi_1561 0.61 +0.8
1,624,581 - Dshi_1561 0.63 -0.7
1,624,941 + Dshi_1561 0.73 -0.4
1,624,947 - Dshi_1561 0.73 -1.1
1,625,003 + Dshi_1561 0.75 -0.0
1,625,035 + Dshi_1561 0.76 -0.4
1,625,043 - Dshi_1561 0.76 -0.6
1,625,370 - Dshi_1561 0.85 -0.9
1,625,370 - Dshi_1561 0.85 -0.4
1,625,607 + -0.3
1,625,838 + -0.7
1,625,915 + +0.2
1,625,985 + +0.1
1,626,139 + +0.0
1,626,383 - Dshi_1562 0.18 +0.4
1,626,468 - Dshi_1562 0.34 +1.5
1,626,561 + Dshi_1562 0.51 -0.5
1,626,584 - Dshi_1562 0.55 -0.1
1,626,592 + Dshi_1562 0.57 +0.1
1,626,592 + Dshi_1562 0.57 -0.6
1,626,629 - Dshi_1562 0.64 +0.0
1,626,659 - Dshi_1562 0.69 -1.0
1,626,684 + Dshi_1562 0.74 -0.8
1,626,732 + Dshi_1562 0.83 -0.2

Or see this region's nucleotide sequence