Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1553

Experiment: m.b. Chlorite 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1552 and Dshi_1553 overlap by 4 nucleotidesDshi_1553 and Dshi_1554 overlap by 4 nucleotidesDshi_1554 and Dshi_1555 are separated by 69 nucleotides Dshi_1552: Dshi_1552 - type III effector Hrp-dependent outers (RefSeq), at 1,614,497 to 1,615,753 _1552 Dshi_1553: Dshi_1553 - class II aldolase/adducin family protein (RefSeq), at 1,615,750 to 1,616,400 _1553 Dshi_1554: Dshi_1554 - Hydroxypyruvate isomerase (RefSeq), at 1,616,397 to 1,617,161 _1554 Dshi_1555: Dshi_1555 - transcriptional regulator, XRE family (RefSeq), at 1,617,231 to 1,617,857 _1555 Position (kb) 1615 1616 1617Strain fitness (log2 ratio) -1 0 1at 1614.964 kb on - strand, within Dshi_1552at 1615.203 kb on - strand, within Dshi_1552at 1615.404 kb on - strand, within Dshi_1552at 1615.422 kb on - strand, within Dshi_1552at 1615.746 kb on + strandat 1615.762 kb on - strandat 1616.163 kb on + strand, within Dshi_1553at 1616.185 kb on + strand, within Dshi_1553at 1616.204 kb on + strand, within Dshi_1553at 1616.386 kb on + strandat 1616.827 kb on - strand, within Dshi_1554at 1616.863 kb on - strand, within Dshi_1554at 1617.043 kb on + strand, within Dshi_1554at 1617.373 kb on + strand, within Dshi_1555

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
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1,614,964 - Dshi_1552 0.37 -0.2
1,615,203 - Dshi_1552 0.56 +1.4
1,615,404 - Dshi_1552 0.72 -0.4
1,615,422 - Dshi_1552 0.74 -0.1
1,615,746 + +0.1
1,615,762 - -0.3
1,616,163 + Dshi_1553 0.63 +0.1
1,616,185 + Dshi_1553 0.67 -0.6
1,616,204 + Dshi_1553 0.70 -1.0
1,616,386 + +0.5
1,616,827 - Dshi_1554 0.56 -0.8
1,616,863 - Dshi_1554 0.61 +0.2
1,617,043 + Dshi_1554 0.84 +0.2
1,617,373 + Dshi_1555 0.23 -0.1

Or see this region's nucleotide sequence