Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1422

Experiment: m.b. Chlorite 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1421 and Dshi_1422 are separated by 56 nucleotidesDshi_1422 and Dshi_1423 overlap by 1 nucleotidesDshi_1423 and Dshi_1424 overlap by 1 nucleotides Dshi_1421: Dshi_1421 - ribose ABC transporter, substrate-binding protein (RefSeq), at 1,473,533 to 1,474,705 _1421 Dshi_1422: Dshi_1422 - ABC transporter related (RefSeq), at 1,474,762 to 1,476,309 _1422 Dshi_1423: Dshi_1423 - inner-membrane translocator (RefSeq), at 1,476,309 to 1,477,271 _1423 Dshi_1424: Dshi_1424 - inner-membrane translocator (RefSeq), at 1,477,271 to 1,478,302 _1424 Position (kb) 1474 1475 1476 1477Strain fitness (log2 ratio) -1 0 1 2at 1473.767 kb on + strand, within Dshi_1421at 1473.775 kb on - strand, within Dshi_1421at 1473.943 kb on + strand, within Dshi_1421at 1473.967 kb on + strand, within Dshi_1421at 1473.975 kb on + strand, within Dshi_1421at 1473.975 kb on - strand, within Dshi_1421at 1473.975 kb on - strand, within Dshi_1421at 1474.053 kb on + strand, within Dshi_1421at 1474.077 kb on - strand, within Dshi_1421at 1474.210 kb on - strand, within Dshi_1421at 1474.215 kb on - strand, within Dshi_1421at 1474.490 kb on + strand, within Dshi_1421at 1474.511 kb on - strand, within Dshi_1421at 1474.571 kb on + strand, within Dshi_1421at 1474.745 kb on + strandat 1474.815 kb on + strandat 1474.947 kb on - strand, within Dshi_1422at 1475.372 kb on - strand, within Dshi_1422at 1475.379 kb on - strand, within Dshi_1422at 1475.493 kb on - strand, within Dshi_1422at 1475.665 kb on - strand, within Dshi_1422at 1475.692 kb on + strand, within Dshi_1422at 1475.692 kb on + strand, within Dshi_1422at 1475.730 kb on + strand, within Dshi_1422at 1475.758 kb on + strand, within Dshi_1422at 1475.766 kb on - strand, within Dshi_1422at 1475.875 kb on - strand, within Dshi_1422at 1475.877 kb on + strand, within Dshi_1422at 1475.891 kb on - strand, within Dshi_1422at 1475.893 kb on - strand, within Dshi_1422at 1476.002 kb on + strand, within Dshi_1422at 1476.012 kb on + strand, within Dshi_1422at 1476.083 kb on - strand, within Dshi_1422at 1476.088 kb on - strand, within Dshi_1422at 1476.118 kb on + strand, within Dshi_1422at 1476.118 kb on + strand, within Dshi_1422at 1476.403 kb on + strandat 1476.403 kb on + strandat 1476.412 kb on + strand, within Dshi_1423at 1476.412 kb on + strand, within Dshi_1423at 1476.501 kb on + strand, within Dshi_1423at 1476.501 kb on + strand, within Dshi_1423at 1476.677 kb on - strand, within Dshi_1423at 1476.809 kb on - strand, within Dshi_1423at 1476.816 kb on + strand, within Dshi_1423at 1476.900 kb on + strand, within Dshi_1423at 1476.900 kb on + strand, within Dshi_1423at 1476.900 kb on + strand, within Dshi_1423at 1476.900 kb on + strand, within Dshi_1423at 1476.900 kb on + strand, within Dshi_1423at 1476.900 kb on + strand, within Dshi_1423at 1476.900 kb on + strand, within Dshi_1423at 1476.908 kb on - strand, within Dshi_1423at 1476.908 kb on - strand, within Dshi_1423at 1476.908 kb on - strand, within Dshi_1423at 1476.908 kb on - strand, within Dshi_1423at 1477.228 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
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1,473,767 + Dshi_1421 0.20 +0.6
1,473,775 - Dshi_1421 0.21 +0.1
1,473,943 + Dshi_1421 0.35 +0.4
1,473,967 + Dshi_1421 0.37 -0.2
1,473,975 + Dshi_1421 0.38 -0.9
1,473,975 - Dshi_1421 0.38 +0.9
1,473,975 - Dshi_1421 0.38 -0.2
1,474,053 + Dshi_1421 0.44 -0.1
1,474,077 - Dshi_1421 0.46 -0.6
1,474,210 - Dshi_1421 0.58 +0.5
1,474,215 - Dshi_1421 0.58 +1.1
1,474,490 + Dshi_1421 0.82 -0.2
1,474,511 - Dshi_1421 0.83 +1.8
1,474,571 + Dshi_1421 0.88 -1.2
1,474,745 + +0.8
1,474,815 + -0.5
1,474,947 - Dshi_1422 0.12 -0.1
1,475,372 - Dshi_1422 0.39 -0.6
1,475,379 - Dshi_1422 0.40 -0.5
1,475,493 - Dshi_1422 0.47 +0.2
1,475,665 - Dshi_1422 0.58 +0.1
1,475,692 + Dshi_1422 0.60 +2.1
1,475,692 + Dshi_1422 0.60 +1.4
1,475,730 + Dshi_1422 0.63 -0.8
1,475,758 + Dshi_1422 0.64 -0.6
1,475,766 - Dshi_1422 0.65 -0.9
1,475,875 - Dshi_1422 0.72 -0.7
1,475,877 + Dshi_1422 0.72 -0.4
1,475,891 - Dshi_1422 0.73 -0.5
1,475,893 - Dshi_1422 0.73 -0.4
1,476,002 + Dshi_1422 0.80 -0.6
1,476,012 + Dshi_1422 0.81 +0.3
1,476,083 - Dshi_1422 0.85 +0.1
1,476,088 - Dshi_1422 0.86 -0.7
1,476,118 + Dshi_1422 0.88 +1.0
1,476,118 + Dshi_1422 0.88 -0.6
1,476,403 + -0.1
1,476,403 + -0.2
1,476,412 + Dshi_1423 0.11 -0.6
1,476,412 + Dshi_1423 0.11 -0.2
1,476,501 + Dshi_1423 0.20 -0.1
1,476,501 + Dshi_1423 0.20 +0.2
1,476,677 - Dshi_1423 0.38 +1.2
1,476,809 - Dshi_1423 0.52 +0.7
1,476,816 + Dshi_1423 0.53 -0.3
1,476,900 + Dshi_1423 0.61 -0.4
1,476,900 + Dshi_1423 0.61 -0.2
1,476,900 + Dshi_1423 0.61 +0.0
1,476,900 + Dshi_1423 0.61 +0.1
1,476,900 + Dshi_1423 0.61 -0.3
1,476,900 + Dshi_1423 0.61 +0.0
1,476,900 + Dshi_1423 0.61 +0.7
1,476,908 - Dshi_1423 0.62 +0.7
1,476,908 - Dshi_1423 0.62 +0.6
1,476,908 - Dshi_1423 0.62 +0.2
1,476,908 - Dshi_1423 0.62 +0.2
1,477,228 + +0.1

Or see this region's nucleotide sequence