Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1397

Experiment: m.b. Chlorite 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1395 and Dshi_1396 are separated by 9 nucleotidesDshi_1396 and Dshi_1397 are separated by 154 nucleotidesDshi_1397 and Dshi_1398 are separated by 131 nucleotidesDshi_1398 and Dshi_1399 are separated by 80 nucleotides Dshi_1395: Dshi_1395 - acetyl-CoA carboxylase, biotin carboxylase (RefSeq), at 1,447,094 to 1,448,440 _1395 Dshi_1396: Dshi_1396 - acetyl-CoA carboxylase, biotin carboxyl carrier protein (RefSeq), at 1,448,450 to 1,448,977 _1396 Dshi_1397: Dshi_1397 - Phospholipase/lecithinase/hemolysin-like protein (RefSeq), at 1,449,132 to 1,450,748 _1397 Dshi_1398: Dshi_1398 - Domain of unknown function DUF1791 (RefSeq), at 1,450,880 to 1,451,332 _1398 Dshi_1399: Dshi_1399 - acetate--CoA ligase (RefSeq), at 1,451,413 to 1,453,374 _1399 Position (kb) 1449 1450 1451Strain fitness (log2 ratio) -1 0 1 2at 1449.099 kb on + strandat 1449.116 kb on - strandat 1449.190 kb on + strandat 1449.212 kb on + strandat 1449.264 kb on - strandat 1449.295 kb on - strand, within Dshi_1397at 1449.442 kb on + strand, within Dshi_1397at 1449.573 kb on + strand, within Dshi_1397at 1449.573 kb on + strand, within Dshi_1397at 1449.578 kb on + strand, within Dshi_1397at 1449.670 kb on + strand, within Dshi_1397at 1449.702 kb on + strand, within Dshi_1397at 1449.754 kb on - strand, within Dshi_1397at 1449.984 kb on - strand, within Dshi_1397at 1449.994 kb on - strand, within Dshi_1397at 1450.083 kb on + strand, within Dshi_1397at 1450.132 kb on - strand, within Dshi_1397at 1450.213 kb on - strand, within Dshi_1397at 1450.556 kb on + strand, within Dshi_1397at 1450.675 kb on - strandat 1450.750 kb on - strandat 1450.922 kb on + strandat 1450.952 kb on - strand, within Dshi_1398at 1450.987 kb on + strand, within Dshi_1398at 1450.992 kb on - strand, within Dshi_1398at 1451.010 kb on + strand, within Dshi_1398at 1451.013 kb on + strand, within Dshi_1398at 1451.042 kb on - strand, within Dshi_1398at 1451.088 kb on - strand, within Dshi_1398at 1451.088 kb on - strand, within Dshi_1398at 1451.165 kb on - strand, within Dshi_1398at 1451.213 kb on - strand, within Dshi_1398at 1451.316 kb on - strandat 1451.316 kb on - strandat 1451.316 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
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1,449,099 + -0.5
1,449,116 - -0.8
1,449,190 + -0.5
1,449,212 + -0.4
1,449,264 - +0.9
1,449,295 - Dshi_1397 0.10 +0.9
1,449,442 + Dshi_1397 0.19 -0.2
1,449,573 + Dshi_1397 0.27 -0.3
1,449,573 + Dshi_1397 0.27 +1.0
1,449,578 + Dshi_1397 0.28 +1.8
1,449,670 + Dshi_1397 0.33 -0.8
1,449,702 + Dshi_1397 0.35 -0.1
1,449,754 - Dshi_1397 0.38 +0.2
1,449,984 - Dshi_1397 0.53 +0.3
1,449,994 - Dshi_1397 0.53 +0.1
1,450,083 + Dshi_1397 0.59 +0.3
1,450,132 - Dshi_1397 0.62 +0.9
1,450,213 - Dshi_1397 0.67 +0.6
1,450,556 + Dshi_1397 0.88 +0.9
1,450,675 - +0.2
1,450,750 - -0.8
1,450,922 + +0.2
1,450,952 - Dshi_1398 0.16 +0.1
1,450,987 + Dshi_1398 0.24 -0.6
1,450,992 - Dshi_1398 0.25 +0.8
1,451,010 + Dshi_1398 0.29 -0.3
1,451,013 + Dshi_1398 0.29 +0.5
1,451,042 - Dshi_1398 0.36 +0.6
1,451,088 - Dshi_1398 0.46 -1.2
1,451,088 - Dshi_1398 0.46 -0.5
1,451,165 - Dshi_1398 0.63 +0.4
1,451,213 - Dshi_1398 0.74 +0.8
1,451,316 - +0.3
1,451,316 - +0.8
1,451,316 - -0.0

Or see this region's nucleotide sequence