Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1391

Experiment: m.b. Chlorite 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1389 and Dshi_1390 are separated by 30 nucleotidesDshi_1390 and Dshi_1391 are separated by 47 nucleotidesDshi_1391 and Dshi_1392 overlap by 4 nucleotidesDshi_1392 and Dshi_1393 are separated by 9 nucleotides Dshi_1389: Dshi_1389 - deoxyribodipyrimidine photo-lyase, putative (RefSeq), at 1,442,883 to 1,444,100 _1389 Dshi_1390: Dshi_1390 - NADH:ubiquinone oxidoreductase 17.2 kD subunit (RefSeq), at 1,444,131 to 1,444,565 _1390 Dshi_1391: Dshi_1391 - Mammalian cell entry related domain protein (RefSeq), at 1,444,613 to 1,445,059 _1391 Dshi_1392: Dshi_1392 - hypothetical protein (RefSeq), at 1,445,056 to 1,445,598 _1392 Dshi_1393: Dshi_1393 - hypothetical protein (RefSeq), at 1,445,608 to 1,446,195 _1393 Position (kb) 1444 1445 1446Strain fitness (log2 ratio) -1 0 1at 1443.722 kb on - strand, within Dshi_1389at 1443.722 kb on - strand, within Dshi_1389at 1443.841 kb on - strand, within Dshi_1389at 1443.883 kb on + strand, within Dshi_1389at 1443.883 kb on + strand, within Dshi_1389at 1443.908 kb on + strand, within Dshi_1389at 1444.739 kb on + strand, within Dshi_1391at 1444.759 kb on - strand, within Dshi_1391at 1444.997 kb on + strand, within Dshi_1391at 1445.002 kb on + strand, within Dshi_1391at 1445.013 kb on + strand, within Dshi_1391at 1445.080 kb on + strandat 1445.088 kb on - strandat 1445.114 kb on + strand, within Dshi_1392at 1445.501 kb on - strand, within Dshi_1392at 1445.511 kb on - strand, within Dshi_1392at 1445.573 kb on + strandat 1445.600 kb on - strandat 1445.632 kb on + strandat 1445.683 kb on - strand, within Dshi_1393at 1445.724 kb on + strand, within Dshi_1393at 1445.816 kb on - strand, within Dshi_1393at 1445.846 kb on - strand, within Dshi_1393at 1445.978 kb on - strand, within Dshi_1393at 1446.025 kb on + strand, within Dshi_1393at 1446.033 kb on - strand, within Dshi_1393

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
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1,443,722 - Dshi_1389 0.69 -0.2
1,443,722 - Dshi_1389 0.69 +0.6
1,443,841 - Dshi_1389 0.79 +0.9
1,443,883 + Dshi_1389 0.82 -0.2
1,443,883 + Dshi_1389 0.82 -0.6
1,443,908 + Dshi_1389 0.84 +0.1
1,444,739 + Dshi_1391 0.28 -0.7
1,444,759 - Dshi_1391 0.33 -1.6
1,444,997 + Dshi_1391 0.86 -0.3
1,445,002 + Dshi_1391 0.87 +0.6
1,445,013 + Dshi_1391 0.89 -0.9
1,445,080 + -1.4
1,445,088 - -0.3
1,445,114 + Dshi_1392 0.11 -0.2
1,445,501 - Dshi_1392 0.82 -0.3
1,445,511 - Dshi_1392 0.84 +0.7
1,445,573 + +0.5
1,445,600 - +0.3
1,445,632 + -0.1
1,445,683 - Dshi_1393 0.13 +0.0
1,445,724 + Dshi_1393 0.20 -0.0
1,445,816 - Dshi_1393 0.35 -0.3
1,445,846 - Dshi_1393 0.40 +0.6
1,445,978 - Dshi_1393 0.63 +0.5
1,446,025 + Dshi_1393 0.71 +0.7
1,446,033 - Dshi_1393 0.72 +0.4

Or see this region's nucleotide sequence