Experiment: m.b. Chlorite 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1356 and Dshi_1357 overlap by 13 nucleotides Dshi_1357 and Dshi_1358 are separated by 2 nucleotides Dshi_1358 and Dshi_1359 are separated by 148 nucleotides
Dshi_1356: Dshi_1356 - hypothetical protein (RefSeq), at 1,408,670 to 1,409,944
_1356
Dshi_1357: Dshi_1357 - ABC transporter related (RefSeq), at 1,409,932 to 1,410,981
_1357
Dshi_1358: Dshi_1358 - short-chain dehydrogenase/reductase SDR (RefSeq), at 1,410,984 to 1,411,760
_1358
Dshi_1359: Dshi_1359 - protein of unknown function DUF35 (RefSeq), at 1,411,909 to 1,412,286
_1359
Position (kb)
1409
1410
1411 Strain fitness (log2 ratio)
-1
0
1
2 at 1408.959 kb on + strand, within Dshi_1356 at 1409.128 kb on - strand, within Dshi_1356 at 1409.147 kb on - strand, within Dshi_1356 at 1409.232 kb on + strand, within Dshi_1356 at 1409.243 kb on - strand, within Dshi_1356 at 1409.294 kb on - strand, within Dshi_1356 at 1409.308 kb on - strand, within Dshi_1356 at 1409.397 kb on - strand, within Dshi_1356 at 1409.407 kb on - strand, within Dshi_1356 at 1409.429 kb on - strand, within Dshi_1356 at 1409.429 kb on - strand, within Dshi_1356 at 1409.440 kb on - strand, within Dshi_1356 at 1409.470 kb on + strand, within Dshi_1356 at 1409.470 kb on + strand, within Dshi_1356 at 1409.478 kb on - strand, within Dshi_1356 at 1409.767 kb on + strand, within Dshi_1356 at 1409.840 kb on + strand at 1409.910 kb on + strand at 1409.939 kb on + strand at 1409.939 kb on + strand at 1410.088 kb on + strand, within Dshi_1357 at 1410.122 kb on + strand, within Dshi_1357 at 1410.152 kb on + strand, within Dshi_1357 at 1410.162 kb on + strand at 1410.179 kb on - strand, within Dshi_1357 at 1410.359 kb on + strand, within Dshi_1357 at 1410.389 kb on + strand at 1410.477 kb on - strand, within Dshi_1357 at 1410.487 kb on + strand, within Dshi_1357 at 1410.581 kb on + strand, within Dshi_1357 at 1410.638 kb on + strand, within Dshi_1357 at 1410.801 kb on + strand, within Dshi_1357 at 1410.880 kb on - strand at 1411.010 kb on + strand at 1411.158 kb on + strand, within Dshi_1358 at 1411.206 kb on + strand, within Dshi_1358 at 1411.357 kb on - strand, within Dshi_1358 at 1411.366 kb on - strand, within Dshi_1358 at 1411.498 kb on - strand, within Dshi_1358 at 1411.498 kb on - strand, within Dshi_1358 at 1411.630 kb on - strand, within Dshi_1358 at 1411.642 kb on + strand, within Dshi_1358 at 1411.765 kb on - strand at 1411.857 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM remove 1,408,959 + Dshi_1356 0.23 +0.3 1,409,128 - Dshi_1356 0.36 -1.0 1,409,147 - Dshi_1356 0.37 -0.1 1,409,232 + Dshi_1356 0.44 -0.3 1,409,243 - Dshi_1356 0.45 +0.0 1,409,294 - Dshi_1356 0.49 -0.0 1,409,308 - Dshi_1356 0.50 -0.3 1,409,397 - Dshi_1356 0.57 -0.7 1,409,407 - Dshi_1356 0.58 -0.5 1,409,429 - Dshi_1356 0.60 +0.0 1,409,429 - Dshi_1356 0.60 -0.9 1,409,440 - Dshi_1356 0.60 -0.0 1,409,470 + Dshi_1356 0.63 -0.0 1,409,470 + Dshi_1356 0.63 +0.4 1,409,478 - Dshi_1356 0.63 +0.3 1,409,767 + Dshi_1356 0.86 -0.8 1,409,840 + +0.4 1,409,910 + +1.2 1,409,939 + +1.8 1,409,939 + +0.9 1,410,088 + Dshi_1357 0.15 +1.3 1,410,122 + Dshi_1357 0.18 +0.2 1,410,152 + Dshi_1357 0.21 +0.0 1,410,162 + +0.8 1,410,179 - Dshi_1357 0.24 +0.1 1,410,359 + Dshi_1357 0.41 +0.0 1,410,389 + +0.6 1,410,477 - Dshi_1357 0.52 -0.5 1,410,487 + Dshi_1357 0.53 +0.3 1,410,581 + Dshi_1357 0.62 -0.5 1,410,638 + Dshi_1357 0.67 +0.4 1,410,801 + Dshi_1357 0.83 +0.0 1,410,880 - +0.2 1,411,010 + -0.8 1,411,158 + Dshi_1358 0.22 -0.5 1,411,206 + Dshi_1358 0.29 -0.1 1,411,357 - Dshi_1358 0.48 -0.4 1,411,366 - Dshi_1358 0.49 -0.2 1,411,498 - Dshi_1358 0.66 +1.0 1,411,498 - Dshi_1358 0.66 -0.4 1,411,630 - Dshi_1358 0.83 +0.1 1,411,642 + Dshi_1358 0.85 +0.1 1,411,765 - -0.5 1,411,857 + +0.2
Or see this region's nucleotide sequence