Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1290

Experiment: m.b. Chlorite 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1288 and Dshi_1289 are separated by 47 nucleotidesDshi_1289 and Dshi_1290 are separated by 91 nucleotidesDshi_1290 and Dshi_1291 are separated by 232 nucleotidesDshi_1291 and Dshi_1292 overlap by 4 nucleotides Dshi_1288: Dshi_1288 - amidohydrolase (RefSeq), at 1,341,315 to 1,342,481 _1288 Dshi_1289: Dshi_1289 - glutamine amidotransferase class-I (RefSeq), at 1,342,529 to 1,343,269 _1289 Dshi_1290: Dshi_1290 - molybdenum cofactor biosynthesis protein A (RefSeq), at 1,343,361 to 1,344,371 _1290 Dshi_1291: Dshi_1291 - DNA alkylation repair enzyme (RefSeq), at 1,344,604 to 1,345,305 _1291 Dshi_1292: Dshi_1292 - pyridoxamine 5'-phosphate oxidase-related FMN-binding (RefSeq), at 1,345,302 to 1,345,850 _1292 Position (kb) 1343 1344 1345Strain fitness (log2 ratio) -2 -1 0 1at 1342.443 kb on + strandat 1343.019 kb on - strand, within Dshi_1289at 1343.019 kb on - strand, within Dshi_1289at 1343.126 kb on + strand, within Dshi_1289at 1343.263 kb on + strandat 1343.568 kb on + strand, within Dshi_1290at 1344.216 kb on + strand, within Dshi_1290at 1344.276 kb on + strandat 1344.359 kb on - strandat 1344.424 kb on - strandat 1344.536 kb on + strandat 1344.851 kb on - strand, within Dshi_1291at 1344.854 kb on - strand, within Dshi_1291at 1344.887 kb on + strand, within Dshi_1291at 1344.895 kb on - strand, within Dshi_1291at 1344.915 kb on - strand, within Dshi_1291at 1344.981 kb on - strand, within Dshi_1291

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
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1,342,443 + +0.3
1,343,019 - Dshi_1289 0.66 -0.8
1,343,019 - Dshi_1289 0.66 +0.1
1,343,126 + Dshi_1289 0.81 -0.0
1,343,263 + +0.4
1,343,568 + Dshi_1290 0.20 -1.5
1,344,216 + Dshi_1290 0.85 -2.7
1,344,276 + -2.0
1,344,359 - +0.2
1,344,424 - +0.1
1,344,536 + +0.8
1,344,851 - Dshi_1291 0.35 +0.4
1,344,854 - Dshi_1291 0.36 +0.1
1,344,887 + Dshi_1291 0.40 +0.1
1,344,895 - Dshi_1291 0.41 +1.2
1,344,915 - Dshi_1291 0.44 +0.8
1,344,981 - Dshi_1291 0.54 -0.5

Or see this region's nucleotide sequence