Experiment: m.b. Chlorite 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1190 and Dshi_1191 are separated by 159 nucleotides Dshi_1191 and Dshi_1192 are separated by 5 nucleotides Dshi_1192 and Dshi_1193 are separated by 246 nucleotides
Dshi_1190: Dshi_1190 - permease YjgP/YjgQ family protein (RefSeq), at 1,227,261 to 1,228,403
_1190
Dshi_1191: Dshi_1191 - Leucyl aminopeptidase (RefSeq), at 1,228,563 to 1,230,029
_1191
Dshi_1192: Dshi_1192 - DNA polymerase III chi subunit HolC (RefSeq), at 1,230,035 to 1,230,490
_1192
Dshi_1193: Dshi_1193 - cytochrome P450 (RefSeq), at 1,230,737 to 1,231,909
_1193
Position (kb)
1228
1229
1230
1231 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1228.694 kb on + strand at 1228.789 kb on + strand, within Dshi_1191 at 1228.798 kb on + strand, within Dshi_1191 at 1228.806 kb on - strand, within Dshi_1191 at 1228.903 kb on - strand, within Dshi_1191 at 1228.954 kb on - strand, within Dshi_1191 at 1229.189 kb on - strand, within Dshi_1191 at 1229.231 kb on - strand, within Dshi_1191 at 1229.235 kb on + strand, within Dshi_1191 at 1229.235 kb on + strand, within Dshi_1191 at 1229.235 kb on + strand, within Dshi_1191 at 1229.315 kb on + strand, within Dshi_1191 at 1229.383 kb on - strand, within Dshi_1191 at 1229.527 kb on + strand, within Dshi_1191 at 1229.600 kb on - strand, within Dshi_1191 at 1229.931 kb on + strand at 1229.931 kb on + strand at 1230.178 kb on + strand, within Dshi_1192 at 1230.269 kb on - strand, within Dshi_1192 at 1230.290 kb on + strand, within Dshi_1192 at 1230.561 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM remove 1,228,694 + +0.6 1,228,789 + Dshi_1191 0.15 +1.3 1,228,798 + Dshi_1191 0.16 +1.6 1,228,806 - Dshi_1191 0.17 +1.2 1,228,903 - Dshi_1191 0.23 +3.2 1,228,954 - Dshi_1191 0.27 +0.5 1,229,189 - Dshi_1191 0.43 -0.3 1,229,231 - Dshi_1191 0.46 -0.5 1,229,235 + Dshi_1191 0.46 +0.6 1,229,235 + Dshi_1191 0.46 -0.1 1,229,235 + Dshi_1191 0.46 +0.3 1,229,315 + Dshi_1191 0.51 -0.4 1,229,383 - Dshi_1191 0.56 +0.7 1,229,527 + Dshi_1191 0.66 -0.5 1,229,600 - Dshi_1191 0.71 +1.0 1,229,931 + +0.8 1,229,931 + +1.7 1,230,178 + Dshi_1192 0.31 +1.9 1,230,269 - Dshi_1192 0.51 -1.9 1,230,290 + Dshi_1192 0.56 -0.0 1,230,561 - -0.2
Or see this region's nucleotide sequence