Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1191

Experiment: m.b. Chlorite 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1190 and Dshi_1191 are separated by 159 nucleotidesDshi_1191 and Dshi_1192 are separated by 5 nucleotidesDshi_1192 and Dshi_1193 are separated by 246 nucleotides Dshi_1190: Dshi_1190 - permease YjgP/YjgQ family protein (RefSeq), at 1,227,261 to 1,228,403 _1190 Dshi_1191: Dshi_1191 - Leucyl aminopeptidase (RefSeq), at 1,228,563 to 1,230,029 _1191 Dshi_1192: Dshi_1192 - DNA polymerase III chi subunit HolC (RefSeq), at 1,230,035 to 1,230,490 _1192 Dshi_1193: Dshi_1193 - cytochrome P450 (RefSeq), at 1,230,737 to 1,231,909 _1193 Position (kb) 1228 1229 1230 1231Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1228.694 kb on + strandat 1228.789 kb on + strand, within Dshi_1191at 1228.798 kb on + strand, within Dshi_1191at 1228.806 kb on - strand, within Dshi_1191at 1228.903 kb on - strand, within Dshi_1191at 1228.954 kb on - strand, within Dshi_1191at 1229.189 kb on - strand, within Dshi_1191at 1229.231 kb on - strand, within Dshi_1191at 1229.235 kb on + strand, within Dshi_1191at 1229.235 kb on + strand, within Dshi_1191at 1229.235 kb on + strand, within Dshi_1191at 1229.315 kb on + strand, within Dshi_1191at 1229.383 kb on - strand, within Dshi_1191at 1229.527 kb on + strand, within Dshi_1191at 1229.600 kb on - strand, within Dshi_1191at 1229.931 kb on + strandat 1229.931 kb on + strandat 1230.178 kb on + strand, within Dshi_1192at 1230.269 kb on - strand, within Dshi_1192at 1230.290 kb on + strand, within Dshi_1192at 1230.561 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
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1,228,694 + +0.6
1,228,789 + Dshi_1191 0.15 +1.3
1,228,798 + Dshi_1191 0.16 +1.6
1,228,806 - Dshi_1191 0.17 +1.2
1,228,903 - Dshi_1191 0.23 +3.2
1,228,954 - Dshi_1191 0.27 +0.5
1,229,189 - Dshi_1191 0.43 -0.3
1,229,231 - Dshi_1191 0.46 -0.5
1,229,235 + Dshi_1191 0.46 +0.6
1,229,235 + Dshi_1191 0.46 -0.1
1,229,235 + Dshi_1191 0.46 +0.3
1,229,315 + Dshi_1191 0.51 -0.4
1,229,383 - Dshi_1191 0.56 +0.7
1,229,527 + Dshi_1191 0.66 -0.5
1,229,600 - Dshi_1191 0.71 +1.0
1,229,931 + +0.8
1,229,931 + +1.7
1,230,178 + Dshi_1192 0.31 +1.9
1,230,269 - Dshi_1192 0.51 -1.9
1,230,290 + Dshi_1192 0.56 -0.0
1,230,561 - -0.2

Or see this region's nucleotide sequence