Experiment: m.b. Chlorite 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1066 and Dshi_1067 are separated by 278 nucleotides Dshi_1067 and Dshi_1068 are separated by 79 nucleotides Dshi_1068 and Dshi_1069 are separated by 61 nucleotides Dshi_1069 and Dshi_1070 are separated by 187 nucleotides
Dshi_1066: Dshi_1066 - hypothetical protein (RefSeq), at 1,098,458 to 1,098,886
_1066
Dshi_1067: Dshi_1067 - Superoxide dismutase (RefSeq), at 1,099,165 to 1,099,764
_1067
Dshi_1068: Dshi_1068 - hypothetical protein (RefSeq), at 1,099,844 to 1,100,293
_1068
Dshi_1069: Dshi_1069 - Fe-S metabolism associated SufE (RefSeq), at 1,100,355 to 1,100,849
_1069
Dshi_1070: Dshi_1070 - hypothetical protein (RefSeq), at 1,101,037 to 1,101,669
_1070
Position (kb)
1099
1100
1101 Strain fitness (log2 ratio)
-2
-1
0
1 at 1098.912 kb on + strand at 1098.978 kb on - strand at 1099.081 kb on + strand at 1099.138 kb on + strand at 1099.149 kb on + strand at 1099.260 kb on + strand, within Dshi_1067 at 1099.484 kb on - strand, within Dshi_1067 at 1099.561 kb on - strand, within Dshi_1067 at 1099.561 kb on - strand, within Dshi_1067 at 1099.562 kb on - strand, within Dshi_1067 at 1099.583 kb on + strand, within Dshi_1067 at 1099.588 kb on - strand, within Dshi_1067 at 1099.761 kb on + strand at 1100.027 kb on - strand, within Dshi_1068 at 1100.058 kb on - strand, within Dshi_1068 at 1100.181 kb on + strand, within Dshi_1068 at 1100.189 kb on - strand, within Dshi_1068 at 1100.366 kb on + strand at 1100.399 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM remove 1,098,912 + -0.5 1,098,978 - -0.5 1,099,081 + +0.2 1,099,138 + -1.9 1,099,149 + +0.2 1,099,260 + Dshi_1067 0.16 -0.7 1,099,484 - Dshi_1067 0.53 -2.1 1,099,561 - Dshi_1067 0.66 +0.3 1,099,561 - Dshi_1067 0.66 +0.9 1,099,562 - Dshi_1067 0.66 -2.6 1,099,583 + Dshi_1067 0.70 -0.4 1,099,588 - Dshi_1067 0.70 -1.0 1,099,761 + +1.1 1,100,027 - Dshi_1068 0.41 -0.3 1,100,058 - Dshi_1068 0.48 +0.3 1,100,181 + Dshi_1068 0.75 -1.1 1,100,189 - Dshi_1068 0.77 -1.1 1,100,366 + +0.1 1,100,399 - +0.6
Or see this region's nucleotide sequence