Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1067

Experiment: m.b. Chlorite 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1065 and Dshi_1066 are separated by 81 nucleotidesDshi_1066 and Dshi_1067 are separated by 278 nucleotidesDshi_1067 and Dshi_1068 are separated by 79 nucleotidesDshi_1068 and Dshi_1069 are separated by 61 nucleotides Dshi_1065: Dshi_1065 - hypothetical protein (RefSeq), at 1,098,107 to 1,098,376 _1065 Dshi_1066: Dshi_1066 - hypothetical protein (RefSeq), at 1,098,458 to 1,098,886 _1066 Dshi_1067: Dshi_1067 - Superoxide dismutase (RefSeq), at 1,099,165 to 1,099,764 _1067 Dshi_1068: Dshi_1068 - hypothetical protein (RefSeq), at 1,099,844 to 1,100,293 _1068 Dshi_1069: Dshi_1069 - Fe-S metabolism associated SufE (RefSeq), at 1,100,355 to 1,100,849 _1069 Position (kb) 1099 1100Strain fitness (log2 ratio) -2 -1 0 1at 1098.194 kb on + strand, within Dshi_1065at 1098.247 kb on - strand, within Dshi_1065at 1098.350 kb on + strandat 1098.500 kb on + strandat 1098.540 kb on + strand, within Dshi_1066at 1098.548 kb on - strand, within Dshi_1066at 1098.563 kb on - strand, within Dshi_1066at 1098.563 kb on - strand, within Dshi_1066at 1098.605 kb on - strand, within Dshi_1066at 1098.656 kb on + strand, within Dshi_1066at 1098.912 kb on + strandat 1098.978 kb on - strandat 1099.081 kb on + strandat 1099.138 kb on + strandat 1099.149 kb on + strandat 1099.260 kb on + strand, within Dshi_1067at 1099.484 kb on - strand, within Dshi_1067at 1099.561 kb on - strand, within Dshi_1067at 1099.561 kb on - strand, within Dshi_1067at 1099.562 kb on - strand, within Dshi_1067at 1099.583 kb on + strand, within Dshi_1067at 1099.588 kb on - strand, within Dshi_1067at 1099.761 kb on + strandat 1100.027 kb on - strand, within Dshi_1068at 1100.058 kb on - strand, within Dshi_1068at 1100.181 kb on + strand, within Dshi_1068at 1100.189 kb on - strand, within Dshi_1068at 1100.366 kb on + strandat 1100.399 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
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1,098,194 + Dshi_1065 0.32 +0.4
1,098,247 - Dshi_1065 0.52 -0.0
1,098,350 + +1.0
1,098,500 + +0.1
1,098,540 + Dshi_1066 0.19 -0.1
1,098,548 - Dshi_1066 0.21 +0.4
1,098,563 - Dshi_1066 0.24 -0.4
1,098,563 - Dshi_1066 0.24 -0.1
1,098,605 - Dshi_1066 0.34 +0.5
1,098,656 + Dshi_1066 0.46 +0.7
1,098,912 + -0.5
1,098,978 - -0.5
1,099,081 + +0.2
1,099,138 + -1.9
1,099,149 + +0.2
1,099,260 + Dshi_1067 0.16 -0.7
1,099,484 - Dshi_1067 0.53 -2.1
1,099,561 - Dshi_1067 0.66 +0.3
1,099,561 - Dshi_1067 0.66 +0.9
1,099,562 - Dshi_1067 0.66 -2.6
1,099,583 + Dshi_1067 0.70 -0.4
1,099,588 - Dshi_1067 0.70 -1.0
1,099,761 + +1.1
1,100,027 - Dshi_1068 0.41 -0.3
1,100,058 - Dshi_1068 0.48 +0.3
1,100,181 + Dshi_1068 0.75 -1.1
1,100,189 - Dshi_1068 0.77 -1.1
1,100,366 + +0.1
1,100,399 - +0.6

Or see this region's nucleotide sequence