Experiment: m.b. Chlorite 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1037 and Dshi_1038 overlap by 4 nucleotides Dshi_1038 and Dshi_1039 overlap by 4 nucleotides Dshi_1039 and Dshi_1040 overlap by 4 nucleotides
Dshi_1037: Dshi_1037 - TRAP dicarboxylate transporter, DctM subunit (RefSeq), at 1,069,438 to 1,070,742
_1037
Dshi_1038: Dshi_1038 - Asp/Glu racemase (RefSeq), at 1,070,739 to 1,071,509
_1038
Dshi_1039: Dshi_1039 - monooxygenase FAD-binding (RefSeq), at 1,071,506 to 1,072,714
_1039
Dshi_1040: Dshi_1040 - aldehyde oxidase and xanthine dehydrogenase molybdopterin binding (RefSeq), at 1,072,711 to 1,075,002
_1040
Position (kb)
1071
1072
1073 Strain fitness (log2 ratio)
-1
0
1 at 1070.537 kb on + strand, within Dshi_1037 at 1070.866 kb on + strand, within Dshi_1038 at 1070.945 kb on - strand, within Dshi_1038 at 1071.005 kb on + strand, within Dshi_1038 at 1071.016 kb on + strand, within Dshi_1038 at 1071.020 kb on + strand, within Dshi_1038 at 1071.134 kb on + strand, within Dshi_1038 at 1071.191 kb on + strand, within Dshi_1038 at 1071.411 kb on - strand, within Dshi_1038 at 1071.432 kb on + strand, within Dshi_1038 at 1071.538 kb on + strand at 1071.652 kb on - strand, within Dshi_1039 at 1071.683 kb on + strand, within Dshi_1039 at 1072.099 kb on - strand, within Dshi_1039 at 1072.123 kb on - strand, within Dshi_1039 at 1072.192 kb on - strand, within Dshi_1039 at 1072.392 kb on + strand, within Dshi_1039 at 1072.544 kb on + strand, within Dshi_1039 at 1072.610 kb on + strand at 1072.710 kb on - strand at 1072.750 kb on - strand at 1072.758 kb on + strand at 1072.849 kb on + strand at 1072.954 kb on - strand at 1072.954 kb on - strand, within Dshi_1040 at 1073.016 kb on + strand, within Dshi_1040 at 1073.044 kb on + strand, within Dshi_1040 at 1073.057 kb on - strand, within Dshi_1040 at 1073.074 kb on - strand, within Dshi_1040 at 1073.115 kb on + strand, within Dshi_1040 at 1073.221 kb on - strand, within Dshi_1040 at 1073.234 kb on + strand, within Dshi_1040 at 1073.518 kb on + strand, within Dshi_1040 at 1073.603 kb on + strand, within Dshi_1040
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM remove 1,070,537 + Dshi_1037 0.84 -0.2 1,070,866 + Dshi_1038 0.16 -0.0 1,070,945 - Dshi_1038 0.27 -0.0 1,071,005 + Dshi_1038 0.35 -0.4 1,071,016 + Dshi_1038 0.36 -0.2 1,071,020 + Dshi_1038 0.36 -0.2 1,071,134 + Dshi_1038 0.51 +0.4 1,071,191 + Dshi_1038 0.59 -0.7 1,071,411 - Dshi_1038 0.87 -1.0 1,071,432 + Dshi_1038 0.90 +0.1 1,071,538 + -1.6 1,071,652 - Dshi_1039 0.12 -0.5 1,071,683 + Dshi_1039 0.15 -0.7 1,072,099 - Dshi_1039 0.49 -0.6 1,072,123 - Dshi_1039 0.51 -0.5 1,072,192 - Dshi_1039 0.57 -0.6 1,072,392 + Dshi_1039 0.73 +0.1 1,072,544 + Dshi_1039 0.86 +0.2 1,072,610 + +0.8 1,072,710 - -0.5 1,072,750 - -0.1 1,072,758 + -0.1 1,072,849 + +0.2 1,072,954 - +0.4 1,072,954 - Dshi_1040 0.11 -0.6 1,073,016 + Dshi_1040 0.13 -0.8 1,073,044 + Dshi_1040 0.15 -1.2 1,073,057 - Dshi_1040 0.15 +0.4 1,073,074 - Dshi_1040 0.16 -0.6 1,073,115 + Dshi_1040 0.18 -0.2 1,073,221 - Dshi_1040 0.22 +0.6 1,073,234 + Dshi_1040 0.23 -0.9 1,073,518 + Dshi_1040 0.35 +0.6 1,073,603 + Dshi_1040 0.39 -0.1
Or see this region's nucleotide sequence