Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1039

Experiment: m.b. Chlorite 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1037 and Dshi_1038 overlap by 4 nucleotidesDshi_1038 and Dshi_1039 overlap by 4 nucleotidesDshi_1039 and Dshi_1040 overlap by 4 nucleotides Dshi_1037: Dshi_1037 - TRAP dicarboxylate transporter, DctM subunit (RefSeq), at 1,069,438 to 1,070,742 _1037 Dshi_1038: Dshi_1038 - Asp/Glu racemase (RefSeq), at 1,070,739 to 1,071,509 _1038 Dshi_1039: Dshi_1039 - monooxygenase FAD-binding (RefSeq), at 1,071,506 to 1,072,714 _1039 Dshi_1040: Dshi_1040 - aldehyde oxidase and xanthine dehydrogenase molybdopterin binding (RefSeq), at 1,072,711 to 1,075,002 _1040 Position (kb) 1071 1072 1073Strain fitness (log2 ratio) -1 0 1at 1070.537 kb on + strand, within Dshi_1037at 1070.866 kb on + strand, within Dshi_1038at 1070.945 kb on - strand, within Dshi_1038at 1071.005 kb on + strand, within Dshi_1038at 1071.016 kb on + strand, within Dshi_1038at 1071.020 kb on + strand, within Dshi_1038at 1071.134 kb on + strand, within Dshi_1038at 1071.191 kb on + strand, within Dshi_1038at 1071.411 kb on - strand, within Dshi_1038at 1071.432 kb on + strand, within Dshi_1038at 1071.538 kb on + strandat 1071.652 kb on - strand, within Dshi_1039at 1071.683 kb on + strand, within Dshi_1039at 1072.099 kb on - strand, within Dshi_1039at 1072.123 kb on - strand, within Dshi_1039at 1072.192 kb on - strand, within Dshi_1039at 1072.392 kb on + strand, within Dshi_1039at 1072.544 kb on + strand, within Dshi_1039at 1072.610 kb on + strandat 1072.710 kb on - strandat 1072.750 kb on - strandat 1072.758 kb on + strandat 1072.849 kb on + strandat 1072.954 kb on - strandat 1072.954 kb on - strand, within Dshi_1040at 1073.016 kb on + strand, within Dshi_1040at 1073.044 kb on + strand, within Dshi_1040at 1073.057 kb on - strand, within Dshi_1040at 1073.074 kb on - strand, within Dshi_1040at 1073.115 kb on + strand, within Dshi_1040at 1073.221 kb on - strand, within Dshi_1040at 1073.234 kb on + strand, within Dshi_1040at 1073.518 kb on + strand, within Dshi_1040at 1073.603 kb on + strand, within Dshi_1040

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
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1,070,537 + Dshi_1037 0.84 -0.2
1,070,866 + Dshi_1038 0.16 -0.0
1,070,945 - Dshi_1038 0.27 -0.0
1,071,005 + Dshi_1038 0.35 -0.4
1,071,016 + Dshi_1038 0.36 -0.2
1,071,020 + Dshi_1038 0.36 -0.2
1,071,134 + Dshi_1038 0.51 +0.4
1,071,191 + Dshi_1038 0.59 -0.7
1,071,411 - Dshi_1038 0.87 -1.0
1,071,432 + Dshi_1038 0.90 +0.1
1,071,538 + -1.6
1,071,652 - Dshi_1039 0.12 -0.5
1,071,683 + Dshi_1039 0.15 -0.7
1,072,099 - Dshi_1039 0.49 -0.6
1,072,123 - Dshi_1039 0.51 -0.5
1,072,192 - Dshi_1039 0.57 -0.6
1,072,392 + Dshi_1039 0.73 +0.1
1,072,544 + Dshi_1039 0.86 +0.2
1,072,610 + +0.8
1,072,710 - -0.5
1,072,750 - -0.1
1,072,758 + -0.1
1,072,849 + +0.2
1,072,954 - +0.4
1,072,954 - Dshi_1040 0.11 -0.6
1,073,016 + Dshi_1040 0.13 -0.8
1,073,044 + Dshi_1040 0.15 -1.2
1,073,057 - Dshi_1040 0.15 +0.4
1,073,074 - Dshi_1040 0.16 -0.6
1,073,115 + Dshi_1040 0.18 -0.2
1,073,221 - Dshi_1040 0.22 +0.6
1,073,234 + Dshi_1040 0.23 -0.9
1,073,518 + Dshi_1040 0.35 +0.6
1,073,603 + Dshi_1040 0.39 -0.1

Or see this region's nucleotide sequence