Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0940

Experiment: m.b. Chlorite 0.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_0938 and Dshi_0939 are separated by 290 nucleotidesDshi_0939 and Dshi_0940 are separated by 109 nucleotidesDshi_0940 and Dshi_0941 are separated by 329 nucleotides Dshi_0938: Dshi_0938 - transcriptional regulator, AraC family (RefSeq), at 964,490 to 965,500 _0938 Dshi_0939: Dshi_0939 - transposase orfA IS5 family element (RefSeq), at 965,791 to 965,877 _0939 Dshi_0940: Dshi_0940 - hypothetical protein (RefSeq), at 965,987 to 966,301 _0940 Dshi_0941: Dshi_0941 - hypothetical protein (RefSeq), at 966,631 to 967,482 _0941 Position (kb) 965 966 967Strain fitness (log2 ratio) -2 -1 0 1 2 3at 964.993 kb on + strand, within Dshi_0938at 965.019 kb on - strand, within Dshi_0938at 965.135 kb on + strand, within Dshi_0938at 965.193 kb on + strand, within Dshi_0938at 965.282 kb on + strand, within Dshi_0938at 965.303 kb on - strand, within Dshi_0938at 965.307 kb on + strand, within Dshi_0938at 965.315 kb on - strand, within Dshi_0938at 965.370 kb on - strand, within Dshi_0938at 965.427 kb on - strandat 965.444 kb on + strandat 965.449 kb on + strandat 965.495 kb on + strandat 965.512 kb on + strandat 965.518 kb on + strandat 965.518 kb on + strandat 965.591 kb on - strandat 965.699 kb on + strandat 965.705 kb on + strandat 965.718 kb on - strandat 965.720 kb on - strandat 965.720 kb on - strandat 965.756 kb on + strandat 965.816 kb on - strand, within Dshi_0939at 965.844 kb on - strand, within Dshi_0939at 965.973 kb on + strandat 965.994 kb on + strandat 966.027 kb on + strand, within Dshi_0940at 966.027 kb on + strand, within Dshi_0940at 966.032 kb on + strand, within Dshi_0940at 966.034 kb on + strand, within Dshi_0940at 966.042 kb on - strand, within Dshi_0940at 966.042 kb on - strand, within Dshi_0940at 966.042 kb on - strand, within Dshi_0940at 966.042 kb on - strand, within Dshi_0940at 966.042 kb on - strand, within Dshi_0940at 966.047 kb on - strand, within Dshi_0940at 966.057 kb on - strand, within Dshi_0940at 966.057 kb on - strand, within Dshi_0940at 966.063 kb on + strand, within Dshi_0940at 966.094 kb on - strand, within Dshi_0940at 966.094 kb on - strand, within Dshi_0940at 966.152 kb on + strand, within Dshi_0940at 966.161 kb on - strand, within Dshi_0940at 966.169 kb on - strand, within Dshi_0940at 966.203 kb on + strand, within Dshi_0940at 966.211 kb on - strand, within Dshi_0940at 966.212 kb on - strand, within Dshi_0940at 966.281 kb on + strandat 966.304 kb on - strandat 966.339 kb on + strandat 966.347 kb on - strandat 966.401 kb on - strandat 966.419 kb on - strandat 966.424 kb on + strandat 966.432 kb on - strandat 966.466 kb on - strandat 966.484 kb on + strandat 966.491 kb on - strandat 966.516 kb on - strandat 966.581 kb on + strandat 966.589 kb on - strandat 966.653 kb on + strandat 966.657 kb on + strandat 966.682 kb on - strandat 966.687 kb on - strandat 966.691 kb on - strandat 966.861 kb on - strand, within Dshi_0941at 966.861 kb on - strand, within Dshi_0941at 966.861 kb on - strand, within Dshi_0941at 966.861 kb on - strand, within Dshi_0941at 966.863 kb on + strand, within Dshi_0941at 966.899 kb on - strand, within Dshi_0941at 966.935 kb on + strand, within Dshi_0941at 966.972 kb on - strand, within Dshi_0941at 967.129 kb on + strand, within Dshi_0941at 967.251 kb on + strand, within Dshi_0941

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
remove
964,993 + Dshi_0938 0.50 -0.7
965,019 - Dshi_0938 0.52 +0.3
965,135 + Dshi_0938 0.64 +0.2
965,193 + Dshi_0938 0.70 +0.2
965,282 + Dshi_0938 0.78 +0.2
965,303 - Dshi_0938 0.80 +0.3
965,307 + Dshi_0938 0.81 -0.4
965,315 - Dshi_0938 0.82 -0.9
965,370 - Dshi_0938 0.87 +0.3
965,427 - +0.0
965,444 + -0.7
965,449 + +0.3
965,495 + +0.4
965,512 + +0.1
965,518 + +1.0
965,518 + -0.3
965,591 - -0.1
965,699 + +0.8
965,705 + +0.6
965,718 - +0.3
965,720 - -0.4
965,720 - -0.9
965,756 + +0.5
965,816 - Dshi_0939 0.29 +0.2
965,844 - Dshi_0939 0.61 -0.6
965,973 + +0.3
965,994 + +1.7
966,027 + Dshi_0940 0.13 +0.3
966,027 + Dshi_0940 0.13 -0.2
966,032 + Dshi_0940 0.14 +1.0
966,034 + Dshi_0940 0.15 +0.7
966,042 - Dshi_0940 0.17 -0.5
966,042 - Dshi_0940 0.17 +0.4
966,042 - Dshi_0940 0.17 +1.3
966,042 - Dshi_0940 0.17 +1.1
966,042 - Dshi_0940 0.17 +0.1
966,047 - Dshi_0940 0.19 +1.1
966,057 - Dshi_0940 0.22 +0.5
966,057 - Dshi_0940 0.22 +0.5
966,063 + Dshi_0940 0.24 -0.7
966,094 - Dshi_0940 0.34 +2.8
966,094 - Dshi_0940 0.34 +0.6
966,152 + Dshi_0940 0.52 +0.3
966,161 - Dshi_0940 0.55 -0.2
966,169 - Dshi_0940 0.58 +2.6
966,203 + Dshi_0940 0.69 +0.8
966,211 - Dshi_0940 0.71 -0.2
966,212 - Dshi_0940 0.71 -0.5
966,281 + -0.3
966,304 - +0.3
966,339 + -1.2
966,347 - +0.5
966,401 - +0.1
966,419 - -0.7
966,424 + -0.2
966,432 - -0.9
966,466 - -0.7
966,484 + -0.2
966,491 - +0.2
966,516 - -0.8
966,581 + +2.1
966,589 - -0.2
966,653 + +0.3
966,657 + +0.3
966,682 - -0.2
966,687 - +0.3
966,691 - -1.8
966,861 - Dshi_0941 0.27 +0.1
966,861 - Dshi_0941 0.27 +1.2
966,861 - Dshi_0941 0.27 -1.4
966,861 - Dshi_0941 0.27 +0.8
966,863 + Dshi_0941 0.27 -0.2
966,899 - Dshi_0941 0.31 -0.2
966,935 + Dshi_0941 0.36 -0.7
966,972 - Dshi_0941 0.40 -1.0
967,129 + Dshi_0941 0.58 -0.7
967,251 + Dshi_0941 0.73 -0.2

Or see this region's nucleotide sequence