Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0832

Experiment: m.b. Chlorite 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0830 and Dshi_0831 overlap by 4 nucleotidesDshi_0831 and Dshi_0832 are separated by 0 nucleotidesDshi_0832 and Dshi_0833 are separated by 464 nucleotides Dshi_0830: Dshi_0830 - Adenosine deaminase (EC 3.5.4.4) (from data), at 838,252 to 839,247 _0830 Dshi_0831: Dshi_0831 - uracil phosphoribosyltransferase (RefSeq), at 839,244 to 839,876 _0831 Dshi_0832: Dshi_0832 - hypothetical protein (RefSeq), at 839,877 to 840,893 _0832 Dshi_0833: Dshi_0833 - AMP-dependent synthetase and ligase (RefSeq), at 841,358 to 842,983 _0833 Position (kb) 839 840 841Strain fitness (log2 ratio) -2 -1 0 1at 839.002 kb on - strand, within Dshi_0830at 839.154 kb on + strandat 839.247 kb on + strandat 839.368 kb on - strand, within Dshi_0831at 839.408 kb on + strand, within Dshi_0831at 839.408 kb on + strand, within Dshi_0831at 839.632 kb on + strand, within Dshi_0831at 839.646 kb on - strand, within Dshi_0831at 839.774 kb on - strand, within Dshi_0831at 839.819 kb on + strandat 839.935 kb on - strandat 839.969 kb on + strandat 840.002 kb on + strand, within Dshi_0832at 840.213 kb on + strand, within Dshi_0832at 840.353 kb on + strand, within Dshi_0832at 840.434 kb on + strand, within Dshi_0832at 840.594 kb on - strand, within Dshi_0832at 840.688 kb on - strand, within Dshi_0832at 840.854 kb on - strandat 840.878 kb on - strandat 840.893 kb on + strandat 840.895 kb on + strandat 841.015 kb on + strandat 841.043 kb on - strandat 841.043 kb on - strandat 841.153 kb on + strandat 841.161 kb on - strandat 841.319 kb on + strandat 841.342 kb on + strandat 841.413 kb on + strandat 841.498 kb on + strandat 841.578 kb on + strand, within Dshi_0833at 841.583 kb on + strand, within Dshi_0833at 841.591 kb on - strand, within Dshi_0833at 841.609 kb on - strand, within Dshi_0833at 841.757 kb on + strand, within Dshi_0833

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
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839,002 - Dshi_0830 0.75 +0.0
839,154 + +0.3
839,247 + -0.0
839,368 - Dshi_0831 0.20 -0.2
839,408 + Dshi_0831 0.26 +0.0
839,408 + Dshi_0831 0.26 +0.0
839,632 + Dshi_0831 0.61 +0.1
839,646 - Dshi_0831 0.64 +0.1
839,774 - Dshi_0831 0.84 -0.1
839,819 + +0.5
839,935 - -0.9
839,969 + -2.0
840,002 + Dshi_0832 0.12 +0.4
840,213 + Dshi_0832 0.33 -1.1
840,353 + Dshi_0832 0.47 -0.7
840,434 + Dshi_0832 0.55 -1.0
840,594 - Dshi_0832 0.71 -1.6
840,688 - Dshi_0832 0.80 -2.3
840,854 - -2.5
840,878 - -2.1
840,893 + -1.5
840,895 + +0.2
841,015 + +1.2
841,043 - -0.6
841,043 - -0.5
841,153 + +1.1
841,161 - +0.5
841,319 + -0.6
841,342 + +0.8
841,413 + -0.3
841,498 + -0.3
841,578 + Dshi_0833 0.14 -1.0
841,583 + Dshi_0833 0.14 +0.8
841,591 - Dshi_0833 0.14 +0.2
841,609 - Dshi_0833 0.15 -0.8
841,757 + Dshi_0833 0.25 -0.5

Or see this region's nucleotide sequence