Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0790

Experiment: m.b. Chlorite 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0789 and Dshi_0790 are separated by 142 nucleotidesDshi_0790 and Dshi_0791 are separated by 122 nucleotidesDshi_0791 and Dshi_0792 are separated by 58 nucleotides Dshi_0789: Dshi_0789 - potassium efflux system protein (RefSeq), at 794,130 to 796,142 _0789 Dshi_0790: Dshi_0790 - hypothetical protein (RefSeq), at 796,285 to 798,666 _0790 Dshi_0791: Dshi_0791 - protein of unknown function DUF541 (RefSeq), at 798,789 to 799,526 _0791 Dshi_0792: Dshi_0792 - hypothetical protein (RefSeq), at 799,585 to 799,959 _0792 Position (kb) 796 797 798 799Strain fitness (log2 ratio) -2 -1 0 1at 795.346 kb on + strand, within Dshi_0789at 795.357 kb on - strand, within Dshi_0789at 795.458 kb on + strand, within Dshi_0789at 795.466 kb on - strand, within Dshi_0789at 795.484 kb on - strand, within Dshi_0789at 795.850 kb on + strand, within Dshi_0789at 795.850 kb on + strand, within Dshi_0789at 796.016 kb on - strandat 796.076 kb on - strandat 796.198 kb on - strandat 796.266 kb on + strandat 796.330 kb on + strandat 796.338 kb on - strandat 796.815 kb on - strand, within Dshi_0790at 796.936 kb on + strand, within Dshi_0790at 797.374 kb on - strand, within Dshi_0790at 797.374 kb on - strand, within Dshi_0790at 797.625 kb on + strand, within Dshi_0790at 798.010 kb on - strand, within Dshi_0790at 798.026 kb on + strand, within Dshi_0790at 798.286 kb on + strand, within Dshi_0790at 798.289 kb on - strand, within Dshi_0790at 798.352 kb on - strand, within Dshi_0790at 798.449 kb on - strandat 798.515 kb on - strandat 798.781 kb on - strandat 798.824 kb on + strandat 798.869 kb on + strand, within Dshi_0791at 799.180 kb on + strand, within Dshi_0791at 799.588 kb on + strandat 799.657 kb on - strand, within Dshi_0792

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
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795,346 + Dshi_0789 0.60 -0.1
795,357 - Dshi_0789 0.61 -0.5
795,458 + Dshi_0789 0.66 -0.3
795,466 - Dshi_0789 0.66 -0.6
795,484 - Dshi_0789 0.67 +0.8
795,850 + Dshi_0789 0.85 -0.2
795,850 + Dshi_0789 0.85 -0.6
796,016 - +0.7
796,076 - +1.0
796,198 - +0.4
796,266 + -0.2
796,330 + -0.3
796,338 - -1.7
796,815 - Dshi_0790 0.22 -0.5
796,936 + Dshi_0790 0.27 -0.2
797,374 - Dshi_0790 0.46 -1.4
797,374 - Dshi_0790 0.46 -0.7
797,625 + Dshi_0790 0.56 +1.1
798,010 - Dshi_0790 0.72 -0.0
798,026 + Dshi_0790 0.73 -0.2
798,286 + Dshi_0790 0.84 -1.8
798,289 - Dshi_0790 0.84 +0.2
798,352 - Dshi_0790 0.87 -0.6
798,449 - -0.2
798,515 - -0.2
798,781 - +0.5
798,824 + -0.0
798,869 + Dshi_0791 0.11 -0.5
799,180 + Dshi_0791 0.53 +0.2
799,588 + -0.2
799,657 - Dshi_0792 0.19 -0.8

Or see this region's nucleotide sequence