Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0634

Experiment: m.b. Chlorite 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0633 and Dshi_0634 are separated by 204 nucleotidesDshi_0634 and Dshi_0635 are separated by 2 nucleotides Dshi_0633: Dshi_0633 - Phosphate butyryltransferase (RefSeq), at 630,977 to 632,392 _0633 Dshi_0634: Dshi_0634 - glycosyltransferase, putative (RefSeq), at 632,597 to 633,406 _0634 Dshi_0635: Dshi_0635 - cyclic nucleotide-binding (RefSeq), at 633,409 to 635,610 _0635 Position (kb) 632 633 634Strain fitness (log2 ratio) -2 -1 0 1 2at 631.647 kb on + strand, within Dshi_0633at 631.653 kb on + strand, within Dshi_0633at 631.815 kb on - strand, within Dshi_0633at 631.876 kb on + strand, within Dshi_0633at 631.928 kb on - strand, within Dshi_0633at 631.986 kb on - strand, within Dshi_0633at 632.122 kb on - strand, within Dshi_0633at 632.157 kb on - strand, within Dshi_0633at 632.287 kb on + strandat 632.287 kb on + strandat 632.336 kb on + strandat 632.336 kb on + strandat 632.344 kb on - strandat 632.344 kb on - strandat 632.344 kb on - strandat 632.356 kb on - strandat 632.413 kb on + strandat 632.446 kb on + strandat 632.545 kb on + strandat 632.621 kb on - strandat 632.655 kb on - strandat 632.677 kb on + strandat 632.700 kb on - strand, within Dshi_0634at 632.756 kb on - strand, within Dshi_0634at 632.798 kb on - strand, within Dshi_0634at 632.921 kb on - strand, within Dshi_0634at 632.947 kb on + strand, within Dshi_0634at 632.996 kb on - strand, within Dshi_0634at 633.037 kb on + strand, within Dshi_0634at 633.202 kb on - strand, within Dshi_0634at 633.212 kb on - strand, within Dshi_0634at 633.403 kb on - strandat 633.408 kb on - strandat 633.519 kb on + strandat 633.586 kb on + strandat 633.589 kb on - strandat 633.591 kb on + strandat 633.591 kb on + strandat 633.616 kb on + strandat 634.123 kb on + strandat 634.131 kb on - strand, within Dshi_0635at 634.131 kb on - strand, within Dshi_0635at 634.188 kb on + strand, within Dshi_0635at 634.203 kb on - strand, within Dshi_0635at 634.344 kb on + strand, within Dshi_0635

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
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631,647 + Dshi_0633 0.47 +0.5
631,653 + Dshi_0633 0.48 +0.4
631,815 - Dshi_0633 0.59 +0.2
631,876 + Dshi_0633 0.63 -0.6
631,928 - Dshi_0633 0.67 +0.3
631,986 - Dshi_0633 0.71 -0.1
632,122 - Dshi_0633 0.81 -1.3
632,157 - Dshi_0633 0.83 -1.5
632,287 + +0.4
632,287 + +0.2
632,336 + +0.6
632,336 + -0.1
632,344 - -2.1
632,344 - +0.3
632,344 - -0.9
632,356 - -0.5
632,413 + +0.3
632,446 + +2.7
632,545 + -0.7
632,621 - +0.0
632,655 - -0.3
632,677 + -0.4
632,700 - Dshi_0634 0.13 -0.3
632,756 - Dshi_0634 0.20 +1.0
632,798 - Dshi_0634 0.25 -0.5
632,921 - Dshi_0634 0.40 -0.1
632,947 + Dshi_0634 0.43 -1.0
632,996 - Dshi_0634 0.49 -0.7
633,037 + Dshi_0634 0.54 -0.1
633,202 - Dshi_0634 0.75 -0.4
633,212 - Dshi_0634 0.76 -1.5
633,403 - -0.7
633,408 - +0.3
633,519 + +0.4
633,586 + -0.5
633,589 - -0.1
633,591 + -0.0
633,591 + +0.7
633,616 + -0.5
634,123 + +1.9
634,131 - Dshi_0635 0.33 +1.2
634,131 - Dshi_0635 0.33 +0.5
634,188 + Dshi_0635 0.35 +0.8
634,203 - Dshi_0635 0.36 -0.9
634,344 + Dshi_0635 0.42 +0.1

Or see this region's nucleotide sequence