Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0623

Experiment: m.b. Chlorite 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0621 and Dshi_0622 are separated by 73 nucleotidesDshi_0622 and Dshi_0623 are separated by 345 nucleotidesDshi_0623 and Dshi_0624 overlap by 1 nucleotides Dshi_0621: Dshi_0621 - beta-Ig-H3/fasciclin (RefSeq), at 613,772 to 614,260 _0621 Dshi_0622: Dshi_0622 - beta-Ig-H3/fasciclin (RefSeq), at 614,334 to 614,825 _0622 Dshi_0623: Dshi_0623 - oxidoreductase molybdopterin binding (RefSeq), at 615,171 to 616,088 _0623 Dshi_0624: Dshi_0624 - Ferric reductase domain protein transmembrane component domain (RefSeq), at 616,088 to 616,696 _0624 Position (kb) 615 616 617Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 614.208 kb on + strand, within Dshi_0621at 614.218 kb on + strandat 614.311 kb on - strandat 614.317 kb on + strandat 614.356 kb on - strandat 614.408 kb on - strand, within Dshi_0622at 614.423 kb on + strand, within Dshi_0622at 614.448 kb on - strand, within Dshi_0622at 614.532 kb on + strand, within Dshi_0622at 614.555 kb on - strand, within Dshi_0622at 614.631 kb on - strand, within Dshi_0622at 614.739 kb on - strand, within Dshi_0622at 614.750 kb on + strand, within Dshi_0622at 614.768 kb on - strand, within Dshi_0622at 614.779 kb on - strandat 614.792 kb on - strandat 614.864 kb on + strandat 614.886 kb on + strandat 614.894 kb on - strandat 614.894 kb on - strandat 614.922 kb on - strandat 614.964 kb on - strandat 614.973 kb on + strandat 614.983 kb on - strandat 614.990 kb on - strandat 615.032 kb on + strandat 615.074 kb on - strandat 615.074 kb on - strandat 615.110 kb on + strandat 615.116 kb on + strandat 615.124 kb on - strandat 615.147 kb on - strandat 615.181 kb on + strandat 615.198 kb on + strandat 615.198 kb on + strandat 615.198 kb on + strandat 615.199 kb on - strandat 615.206 kb on - strandat 615.391 kb on - strand, within Dshi_0623at 615.409 kb on + strand, within Dshi_0623at 615.409 kb on + strand, within Dshi_0623at 615.410 kb on - strand, within Dshi_0623at 615.414 kb on + strand, within Dshi_0623at 615.444 kb on + strand, within Dshi_0623at 615.464 kb on + strand, within Dshi_0623at 615.535 kb on + strand, within Dshi_0623at 615.535 kb on + strand, within Dshi_0623at 615.537 kb on + strand, within Dshi_0623at 615.537 kb on + strand, within Dshi_0623at 615.537 kb on + strand, within Dshi_0623at 615.537 kb on + strand, within Dshi_0623at 615.537 kb on + strand, within Dshi_0623at 615.537 kb on + strand, within Dshi_0623at 615.537 kb on + strand, within Dshi_0623at 615.537 kb on + strand, within Dshi_0623at 615.537 kb on + strand, within Dshi_0623at 615.545 kb on - strand, within Dshi_0623at 615.545 kb on - strand, within Dshi_0623at 615.545 kb on - strand, within Dshi_0623at 615.594 kb on + strand, within Dshi_0623at 615.638 kb on - strand, within Dshi_0623at 615.652 kb on + strand, within Dshi_0623at 615.708 kb on + strand, within Dshi_0623at 615.716 kb on - strand, within Dshi_0623at 615.733 kb on - strand, within Dshi_0623at 615.775 kb on + strand, within Dshi_0623at 615.792 kb on + strand, within Dshi_0623at 615.867 kb on - strand, within Dshi_0623at 615.868 kb on + strand, within Dshi_0623at 615.869 kb on - strand, within Dshi_0623at 615.885 kb on + strand, within Dshi_0623at 615.893 kb on - strand, within Dshi_0623at 615.895 kb on + strand, within Dshi_0623at 615.955 kb on + strand, within Dshi_0623at 615.959 kb on + strand, within Dshi_0623at 616.043 kb on + strandat 616.043 kb on + strandat 616.051 kb on - strandat 616.059 kb on - strandat 616.069 kb on + strandat 616.121 kb on + strandat 616.121 kb on + strandat 616.121 kb on + strandat 616.200 kb on + strand, within Dshi_0624at 616.200 kb on + strand, within Dshi_0624at 616.230 kb on + strand, within Dshi_0624at 616.267 kb on + strand, within Dshi_0624at 616.379 kb on - strand, within Dshi_0624at 616.398 kb on + strand, within Dshi_0624at 616.401 kb on + strand, within Dshi_0624at 616.411 kb on + strand, within Dshi_0624at 616.425 kb on - strand, within Dshi_0624at 616.458 kb on + strand, within Dshi_0624at 616.458 kb on + strand, within Dshi_0624at 616.466 kb on - strand, within Dshi_0624at 616.466 kb on - strand, within Dshi_0624at 616.466 kb on - strand, within Dshi_0624at 616.466 kb on - strand, within Dshi_0624at 616.466 kb on - strand, within Dshi_0624at 616.466 kb on - strand, within Dshi_0624at 616.475 kb on + strand, within Dshi_0624at 616.480 kb on + strand, within Dshi_0624at 616.483 kb on - strand, within Dshi_0624at 616.488 kb on - strand, within Dshi_0624at 616.512 kb on + strand, within Dshi_0624at 616.548 kb on - strand, within Dshi_0624at 616.621 kb on + strand, within Dshi_0624at 616.621 kb on + strand, within Dshi_0624at 616.660 kb on + strandat 616.683 kb on - strandat 616.692 kb on + strandat 616.692 kb on + strandat 616.799 kb on + strandat 616.807 kb on - strandat 616.807 kb on - strandat 616.822 kb on + strandat 616.831 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
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614,208 + Dshi_0621 0.89 +0.5
614,218 + +1.2
614,311 - +0.2
614,317 + +0.3
614,356 - +0.2
614,408 - Dshi_0622 0.15 -0.5
614,423 + Dshi_0622 0.18 +0.3
614,448 - Dshi_0622 0.23 +0.4
614,532 + Dshi_0622 0.40 +0.4
614,555 - Dshi_0622 0.45 -0.1
614,631 - Dshi_0622 0.60 -2.3
614,739 - Dshi_0622 0.82 -0.7
614,750 + Dshi_0622 0.85 +1.2
614,768 - Dshi_0622 0.88 -1.5
614,779 - +0.4
614,792 - +0.4
614,864 + -0.8
614,886 + -0.4
614,894 - +0.9
614,894 - +0.3
614,922 - +0.3
614,964 - +0.1
614,973 + -0.1
614,983 - +0.2
614,990 - -1.9
615,032 + +0.2
615,074 - -0.1
615,074 - +0.6
615,110 + -0.7
615,116 + -0.0
615,124 - +0.3
615,147 - +0.1
615,181 + -1.4
615,198 + -2.7
615,198 + -2.1
615,198 + -2.6
615,199 - -2.0
615,206 - -2.1
615,391 - Dshi_0623 0.24 -1.7
615,409 + Dshi_0623 0.26 -3.2
615,409 + Dshi_0623 0.26 -2.9
615,410 - Dshi_0623 0.26 -2.1
615,414 + Dshi_0623 0.26 -3.3
615,444 + Dshi_0623 0.30 -1.1
615,464 + Dshi_0623 0.32 -1.2
615,535 + Dshi_0623 0.40 -1.0
615,535 + Dshi_0623 0.40 -1.7
615,537 + Dshi_0623 0.40 +0.2
615,537 + Dshi_0623 0.40 -1.1
615,537 + Dshi_0623 0.40 -1.4
615,537 + Dshi_0623 0.40 -1.7
615,537 + Dshi_0623 0.40 -4.5
615,537 + Dshi_0623 0.40 -3.3
615,537 + Dshi_0623 0.40 -2.1
615,537 + Dshi_0623 0.40 -2.0
615,537 + Dshi_0623 0.40 -2.1
615,545 - Dshi_0623 0.41 -1.7
615,545 - Dshi_0623 0.41 -2.3
615,545 - Dshi_0623 0.41 -1.7
615,594 + Dshi_0623 0.46 -0.1
615,638 - Dshi_0623 0.51 -1.7
615,652 + Dshi_0623 0.52 -2.6
615,708 + Dshi_0623 0.58 -2.1
615,716 - Dshi_0623 0.59 -2.6
615,733 - Dshi_0623 0.61 -2.0
615,775 + Dshi_0623 0.66 -3.1
615,792 + Dshi_0623 0.68 -3.1
615,867 - Dshi_0623 0.76 -2.6
615,868 + Dshi_0623 0.76 -0.7
615,869 - Dshi_0623 0.76 -1.6
615,885 + Dshi_0623 0.78 -3.2
615,893 - Dshi_0623 0.79 -1.5
615,895 + Dshi_0623 0.79 -1.4
615,955 + Dshi_0623 0.85 -2.6
615,959 + Dshi_0623 0.86 -0.1
616,043 + -0.7
616,043 + -2.3
616,051 - -1.1
616,059 - -2.5
616,069 + -1.1
616,121 + -1.7
616,121 + -4.8
616,121 + -1.9
616,200 + Dshi_0624 0.18 -2.9
616,200 + Dshi_0624 0.18 -2.5
616,230 + Dshi_0624 0.23 -3.5
616,267 + Dshi_0624 0.29 -2.9
616,379 - Dshi_0624 0.48 -1.7
616,398 + Dshi_0624 0.51 -1.5
616,401 + Dshi_0624 0.51 -2.8
616,411 + Dshi_0624 0.53 -2.0
616,425 - Dshi_0624 0.55 -2.0
616,458 + Dshi_0624 0.61 -1.6
616,458 + Dshi_0624 0.61 -1.1
616,466 - Dshi_0624 0.62 -0.1
616,466 - Dshi_0624 0.62 -2.9
616,466 - Dshi_0624 0.62 -3.6
616,466 - Dshi_0624 0.62 -0.1
616,466 - Dshi_0624 0.62 -2.1
616,466 - Dshi_0624 0.62 -1.8
616,475 + Dshi_0624 0.64 -2.5
616,480 + Dshi_0624 0.64 -0.4
616,483 - Dshi_0624 0.65 -2.7
616,488 - Dshi_0624 0.66 -2.1
616,512 + Dshi_0624 0.70 -1.9
616,548 - Dshi_0624 0.76 -3.9
616,621 + Dshi_0624 0.88 -0.6
616,621 + Dshi_0624 0.88 -2.1
616,660 + +2.3
616,683 - -0.1
616,692 + +0.2
616,692 + +0.3
616,799 + +0.0
616,807 - +0.9
616,807 - +1.0
616,822 + +1.6
616,831 - +0.3

Or see this region's nucleotide sequence