Experiment: m.b. Chlorite 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0403 and Dshi_0404 are separated by 23 nucleotides Dshi_0404 and Dshi_0405 are separated by 138 nucleotides Dshi_0405 and Dshi_0406 overlap by 70 nucleotides
Dshi_0403: Dshi_0403 - transposase IS3/IS911 family protein (RefSeq), at 397,989 to 398,255
_0403
Dshi_0404: Dshi_0404 - Integrase catalytic region (RefSeq), at 398,279 to 399,088
_0404
Dshi_0405: Dshi_0405 - hypothetical protein (RefSeq), at 399,227 to 400,612
_0405
Dshi_0406: Dshi_0406 - hypothetical protein (RefSeq), at 400,543 to 401,841
_0406
Position (kb) 399
400
401 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 399.120 kb on + strand at 399.151 kb on - strand at 399.151 kb on - strand at 399.151 kb on - strand at 399.151 kb on - strand at 399.267 kb on + strand at 399.286 kb on + strand at 399.287 kb on - strand at 399.294 kb on + strand at 399.294 kb on - strand at 399.302 kb on - strand at 399.302 kb on - strand at 399.302 kb on - strand at 399.302 kb on - strand at 399.302 kb on - strand at 399.302 kb on - strand at 399.336 kb on - strand at 399.342 kb on + strand at 399.378 kb on + strand, within Dshi_0405 at 399.378 kb on + strand, within Dshi_0405 at 399.385 kb on + strand, within Dshi_0405 at 399.394 kb on - strand, within Dshi_0405 at 399.395 kb on + strand, within Dshi_0405 at 399.413 kb on - strand, within Dshi_0405 at 399.425 kb on + strand, within Dshi_0405 at 399.467 kb on + strand, within Dshi_0405 at 399.475 kb on - strand, within Dshi_0405 at 399.510 kb on - strand, within Dshi_0405 at 399.557 kb on + strand, within Dshi_0405 at 399.618 kb on + strand, within Dshi_0405 at 399.626 kb on - strand, within Dshi_0405 at 399.697 kb on + strand, within Dshi_0405 at 399.733 kb on - strand, within Dshi_0405 at 399.733 kb on - strand, within Dshi_0405 at 399.749 kb on - strand, within Dshi_0405 at 399.749 kb on - strand, within Dshi_0405 at 399.781 kb on + strand, within Dshi_0405 at 399.781 kb on + strand, within Dshi_0405 at 399.781 kb on + strand, within Dshi_0405 at 399.789 kb on - strand, within Dshi_0405 at 399.789 kb on - strand, within Dshi_0405 at 399.789 kb on - strand, within Dshi_0405 at 399.789 kb on - strand, within Dshi_0405 at 399.825 kb on + strand, within Dshi_0405 at 399.826 kb on + strand, within Dshi_0405 at 399.911 kb on - strand, within Dshi_0405 at 399.913 kb on + strand, within Dshi_0405 at 399.913 kb on + strand, within Dshi_0405 at 399.957 kb on - strand, within Dshi_0405 at 399.969 kb on + strand, within Dshi_0405 at 400.024 kb on + strand, within Dshi_0405 at 400.024 kb on + strand, within Dshi_0405 at 400.088 kb on - strand, within Dshi_0405 at 400.090 kb on + strand, within Dshi_0405 at 400.090 kb on + strand, within Dshi_0405 at 400.090 kb on + strand, within Dshi_0405 at 400.098 kb on - strand, within Dshi_0405 at 400.148 kb on + strand, within Dshi_0405 at 400.153 kb on + strand, within Dshi_0405 at 400.165 kb on + strand, within Dshi_0405 at 400.168 kb on - strand, within Dshi_0405 at 400.168 kb on - strand, within Dshi_0405 at 400.209 kb on - strand, within Dshi_0405 at 400.220 kb on - strand, within Dshi_0405 at 400.227 kb on + strand, within Dshi_0405 at 400.260 kb on - strand, within Dshi_0405 at 400.279 kb on + strand, within Dshi_0405 at 400.284 kb on + strand, within Dshi_0405 at 400.287 kb on - strand at 400.314 kb on - strand, within Dshi_0405 at 400.330 kb on - strand, within Dshi_0405 at 400.368 kb on - strand, within Dshi_0405 at 400.384 kb on - strand, within Dshi_0405 at 400.384 kb on - strand, within Dshi_0405 at 400.395 kb on + strand, within Dshi_0405 at 400.418 kb on - strand, within Dshi_0405 at 400.456 kb on + strand, within Dshi_0405 at 400.476 kb on + strand at 400.476 kb on + strand at 400.484 kb on - strand at 400.508 kb on + strand at 400.525 kb on + strand at 400.559 kb on - strand at 400.559 kb on - strand at 400.570 kb on - strand at 400.575 kb on + strand at 400.611 kb on - strand at 400.620 kb on + strand at 400.646 kb on + strand at 400.688 kb on - strand, within Dshi_0406 at 400.741 kb on + strand, within Dshi_0406 at 400.749 kb on - strand, within Dshi_0406 at 400.832 kb on - strand, within Dshi_0406 at 400.845 kb on + strand, within Dshi_0406 at 400.846 kb on - strand, within Dshi_0406 at 400.902 kb on + strand, within Dshi_0406 at 400.917 kb on + strand, within Dshi_0406 at 400.924 kb on + strand, within Dshi_0406 at 401.004 kb on + strand, within Dshi_0406 at 401.004 kb on + strand, within Dshi_0406 at 401.012 kb on - strand, within Dshi_0406 at 401.033 kb on + strand, within Dshi_0406 at 401.073 kb on + strand, within Dshi_0406 at 401.090 kb on - strand, within Dshi_0406 at 401.107 kb on + strand, within Dshi_0406 at 401.107 kb on + strand, within Dshi_0406 at 401.115 kb on - strand, within Dshi_0406 at 401.115 kb on - strand, within Dshi_0406 at 401.115 kb on - strand, within Dshi_0406 at 401.123 kb on - strand, within Dshi_0406 at 401.125 kb on + strand, within Dshi_0406 at 401.125 kb on + strand, within Dshi_0406 at 401.125 kb on + strand, within Dshi_0406 at 401.127 kb on + strand, within Dshi_0406 at 401.133 kb on - strand, within Dshi_0406 at 401.133 kb on - strand, within Dshi_0406 at 401.133 kb on - strand, within Dshi_0406 at 401.133 kb on - strand, within Dshi_0406 at 401.133 kb on - strand, within Dshi_0406 at 401.133 kb on - strand, within Dshi_0406 at 401.133 kb on - strand, within Dshi_0406 at 401.133 kb on - strand, within Dshi_0406 at 401.133 kb on - strand, within Dshi_0406 at 401.208 kb on + strand, within Dshi_0406 at 401.222 kb on - strand, within Dshi_0406 at 401.241 kb on + strand, within Dshi_0406 at 401.241 kb on + strand, within Dshi_0406 at 401.256 kb on + strand, within Dshi_0406 at 401.272 kb on + strand, within Dshi_0406 at 401.272 kb on + strand, within Dshi_0406 at 401.272 kb on + strand, within Dshi_0406 at 401.272 kb on + strand, within Dshi_0406 at 401.272 kb on + strand, within Dshi_0406 at 401.272 kb on + strand, within Dshi_0406 at 401.272 kb on + strand, within Dshi_0406 at 401.275 kb on - strand, within Dshi_0406 at 401.280 kb on - strand, within Dshi_0406 at 401.280 kb on - strand, within Dshi_0406 at 401.280 kb on - strand, within Dshi_0406 at 401.356 kb on + strand, within Dshi_0406 at 401.374 kb on - strand, within Dshi_0406 at 401.380 kb on + strand, within Dshi_0406 at 401.392 kb on + strand, within Dshi_0406 at 401.402 kb on + strand, within Dshi_0406 at 401.402 kb on + strand, within Dshi_0406 at 401.408 kb on + strand, within Dshi_0406 at 401.410 kb on - strand, within Dshi_0406 at 401.411 kb on - strand, within Dshi_0406 at 401.414 kb on - strand, within Dshi_0406 at 401.474 kb on - strand, within Dshi_0406 at 401.477 kb on + strand, within Dshi_0406 at 401.477 kb on + strand, within Dshi_0406 at 401.485 kb on - strand, within Dshi_0406 at 401.495 kb on - strand, within Dshi_0406 at 401.520 kb on - strand, within Dshi_0406 at 401.545 kb on + strand, within Dshi_0406 at 401.577 kb on - strand, within Dshi_0406 at 401.586 kb on - strand, within Dshi_0406
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM remove 399,120 + -0.1 399,151 - +0.4 399,151 - +1.2 399,151 - -0.4 399,151 - +0.9 399,267 + +1.3 399,286 + -0.1 399,287 - +0.6 399,294 + +0.3 399,294 - +1.0 399,302 - +0.6 399,302 - -0.5 399,302 - +0.0 399,302 - +0.2 399,302 - +0.7 399,302 - +0.0 399,336 - +1.5 399,342 + -0.4 399,378 + Dshi_0405 0.11 +0.6 399,378 + Dshi_0405 0.11 -0.4 399,385 + Dshi_0405 0.11 -0.0 399,394 - Dshi_0405 0.12 +0.1 399,395 + Dshi_0405 0.12 -1.9 399,413 - Dshi_0405 0.13 +1.4 399,425 + Dshi_0405 0.14 -1.5 399,467 + Dshi_0405 0.17 +0.0 399,475 - Dshi_0405 0.18 -0.3 399,510 - Dshi_0405 0.20 +0.3 399,557 + Dshi_0405 0.24 -0.5 399,618 + Dshi_0405 0.28 -0.2 399,626 - Dshi_0405 0.29 -1.1 399,697 + Dshi_0405 0.34 -1.1 399,733 - Dshi_0405 0.37 -0.3 399,733 - Dshi_0405 0.37 -0.9 399,749 - Dshi_0405 0.38 +0.0 399,749 - Dshi_0405 0.38 +0.4 399,781 + Dshi_0405 0.40 -0.5 399,781 + Dshi_0405 0.40 -0.4 399,781 + Dshi_0405 0.40 +0.5 399,789 - Dshi_0405 0.41 -0.5 399,789 - Dshi_0405 0.41 +0.1 399,789 - Dshi_0405 0.41 +0.4 399,789 - Dshi_0405 0.41 +0.2 399,825 + Dshi_0405 0.43 +0.0 399,826 + Dshi_0405 0.43 +0.1 399,911 - Dshi_0405 0.49 -0.9 399,913 + Dshi_0405 0.49 -1.7 399,913 + Dshi_0405 0.49 -0.1 399,957 - Dshi_0405 0.53 -0.3 399,969 + Dshi_0405 0.54 -0.1 400,024 + Dshi_0405 0.58 +0.2 400,024 + Dshi_0405 0.58 -1.1 400,088 - Dshi_0405 0.62 -0.4 400,090 + Dshi_0405 0.62 +0.3 400,090 + Dshi_0405 0.62 -1.3 400,090 + Dshi_0405 0.62 -0.2 400,098 - Dshi_0405 0.63 -0.3 400,148 + Dshi_0405 0.66 +0.1 400,153 + Dshi_0405 0.67 -1.1 400,165 + Dshi_0405 0.68 -1.0 400,168 - Dshi_0405 0.68 +2.2 400,168 - Dshi_0405 0.68 +0.5 400,209 - Dshi_0405 0.71 -2.4 400,220 - Dshi_0405 0.72 +0.6 400,227 + Dshi_0405 0.72 +1.7 400,260 - Dshi_0405 0.75 +1.0 400,279 + Dshi_0405 0.76 +0.3 400,284 + Dshi_0405 0.76 -0.1 400,287 - +1.9 400,314 - Dshi_0405 0.78 -0.4 400,330 - Dshi_0405 0.80 -0.7 400,368 - Dshi_0405 0.82 -0.3 400,384 - Dshi_0405 0.83 -0.2 400,384 - Dshi_0405 0.83 +0.3 400,395 + Dshi_0405 0.84 +0.1 400,418 - Dshi_0405 0.86 +0.3 400,456 + Dshi_0405 0.89 +1.9 400,476 + +0.0 400,476 + +0.0 400,484 - +0.3 400,508 + +0.2 400,525 + +0.9 400,559 - +0.0 400,559 - +0.3 400,570 - -0.1 400,575 + +0.3 400,611 - +0.7 400,620 + -1.3 400,646 + -0.6 400,688 - Dshi_0406 0.11 +0.2 400,741 + Dshi_0406 0.15 +0.0 400,749 - Dshi_0406 0.16 +0.1 400,832 - Dshi_0406 0.22 +1.2 400,845 + Dshi_0406 0.23 -0.7 400,846 - Dshi_0406 0.23 -0.0 400,902 + Dshi_0406 0.28 -0.1 400,917 + Dshi_0406 0.29 +0.8 400,924 + Dshi_0406 0.29 +0.3 401,004 + Dshi_0406 0.35 +0.3 401,004 + Dshi_0406 0.35 -0.1 401,012 - Dshi_0406 0.36 +2.1 401,033 + Dshi_0406 0.38 +0.2 401,073 + Dshi_0406 0.41 +0.7 401,090 - Dshi_0406 0.42 +0.6 401,107 + Dshi_0406 0.43 -0.2 401,107 + Dshi_0406 0.43 +0.9 401,115 - Dshi_0406 0.44 -3.3 401,115 - Dshi_0406 0.44 -0.5 401,115 - Dshi_0406 0.44 +0.4 401,123 - Dshi_0406 0.45 +0.8 401,125 + Dshi_0406 0.45 -0.5 401,125 + Dshi_0406 0.45 -0.1 401,125 + Dshi_0406 0.45 +0.2 401,127 + Dshi_0406 0.45 +0.0 401,133 - Dshi_0406 0.45 -0.4 401,133 - Dshi_0406 0.45 -0.6 401,133 - Dshi_0406 0.45 -0.0 401,133 - Dshi_0406 0.45 -0.8 401,133 - Dshi_0406 0.45 -0.3 401,133 - Dshi_0406 0.45 +0.1 401,133 - Dshi_0406 0.45 -0.3 401,133 - Dshi_0406 0.45 +0.3 401,133 - Dshi_0406 0.45 -0.0 401,208 + Dshi_0406 0.51 -0.1 401,222 - Dshi_0406 0.52 +0.5 401,241 + Dshi_0406 0.54 +0.5 401,241 + Dshi_0406 0.54 +1.5 401,256 + Dshi_0406 0.55 -0.1 401,272 + Dshi_0406 0.56 -0.1 401,272 + Dshi_0406 0.56 +0.3 401,272 + Dshi_0406 0.56 -0.3 401,272 + Dshi_0406 0.56 -0.3 401,272 + Dshi_0406 0.56 +0.5 401,272 + Dshi_0406 0.56 +0.3 401,272 + Dshi_0406 0.56 -0.1 401,275 - Dshi_0406 0.56 -0.3 401,280 - Dshi_0406 0.57 +0.2 401,280 - Dshi_0406 0.57 +1.3 401,280 - Dshi_0406 0.57 -0.1 401,356 + Dshi_0406 0.63 -0.9 401,374 - Dshi_0406 0.64 +0.1 401,380 + Dshi_0406 0.64 +1.1 401,392 + Dshi_0406 0.65 -0.0 401,402 + Dshi_0406 0.66 +0.6 401,402 + Dshi_0406 0.66 -0.4 401,408 + Dshi_0406 0.67 -0.4 401,410 - Dshi_0406 0.67 -0.1 401,411 - Dshi_0406 0.67 +0.4 401,414 - Dshi_0406 0.67 -0.5 401,474 - Dshi_0406 0.72 +0.6 401,477 + Dshi_0406 0.72 +1.3 401,477 + Dshi_0406 0.72 +2.7 401,485 - Dshi_0406 0.73 +0.2 401,495 - Dshi_0406 0.73 -0.4 401,520 - Dshi_0406 0.75 -1.1 401,545 + Dshi_0406 0.77 +0.7 401,577 - Dshi_0406 0.80 +0.4 401,586 - Dshi_0406 0.80 -0.0
Or see this region's nucleotide sequence