Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0367

Experiment: m.b. Chlorite 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0365 and Dshi_0366 are separated by 6 nucleotidesDshi_0366 and Dshi_0367 are separated by 207 nucleotidesDshi_0367 and Dshi_0368 overlap by 4 nucleotidesDshi_0368 and Dshi_0369 are separated by 17 nucleotides Dshi_0365: Dshi_0365 - anti-ECFsigma factor, ChrR (RefSeq), at 349,194 to 349,865 _0365 Dshi_0366: Dshi_0366 - RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq), at 349,872 to 350,441 _0366 Dshi_0367: Dshi_0367 - amine oxidase (RefSeq), at 350,649 to 351,953 _0367 Dshi_0368: Dshi_0368 - protein of unknown function DUF1365 (RefSeq), at 351,950 to 352,708 _0368 Dshi_0369: Dshi_0369 - sodium:galactoside symporter family protein, putative (RefSeq), at 352,726 to 353,964 _0369 Position (kb) 350 351 352Strain fitness (log2 ratio) -2 -1 0 1 2 3at 349.912 kb on - strandat 349.946 kb on - strand, within Dshi_0366at 350.079 kb on + strand, within Dshi_0366at 350.082 kb on - strand, within Dshi_0366at 350.305 kb on + strand, within Dshi_0366at 350.313 kb on - strand, within Dshi_0366at 350.313 kb on - strand, within Dshi_0366at 350.376 kb on - strand, within Dshi_0366at 350.391 kb on - strandat 350.446 kb on + strandat 350.492 kb on + strandat 350.532 kb on + strandat 350.555 kb on - strandat 350.561 kb on - strandat 350.575 kb on + strandat 350.607 kb on - strandat 350.617 kb on - strandat 350.627 kb on - strandat 350.629 kb on + strandat 350.637 kb on - strandat 350.637 kb on - strandat 350.644 kb on + strandat 350.676 kb on - strandat 350.721 kb on - strandat 350.823 kb on - strand, within Dshi_0367at 350.866 kb on + strand, within Dshi_0367at 350.866 kb on + strand, within Dshi_0367at 350.990 kb on - strand, within Dshi_0367at 351.006 kb on - strand, within Dshi_0367at 351.064 kb on + strand, within Dshi_0367at 351.066 kb on + strand, within Dshi_0367at 351.113 kb on - strand, within Dshi_0367at 351.227 kb on - strand, within Dshi_0367at 351.256 kb on + strand, within Dshi_0367at 351.269 kb on + strand, within Dshi_0367at 351.348 kb on - strand, within Dshi_0367at 351.462 kb on + strand, within Dshi_0367at 351.522 kb on + strand, within Dshi_0367at 351.526 kb on + strand, within Dshi_0367at 351.554 kb on - strand, within Dshi_0367at 351.560 kb on + strand, within Dshi_0367at 351.587 kb on + strand, within Dshi_0367at 351.587 kb on + strand, within Dshi_0367at 351.595 kb on - strand, within Dshi_0367at 351.595 kb on - strand, within Dshi_0367at 351.597 kb on + strand, within Dshi_0367at 351.597 kb on + strand, within Dshi_0367at 351.642 kb on + strand, within Dshi_0367at 351.712 kb on - strand, within Dshi_0367at 351.768 kb on + strand, within Dshi_0367at 351.876 kb on + strandat 351.884 kb on - strandat 351.894 kb on - strandat 351.992 kb on + strandat 352.139 kb on + strand, within Dshi_0368at 352.263 kb on + strand, within Dshi_0368at 352.271 kb on - strand, within Dshi_0368at 352.400 kb on - strand, within Dshi_0368at 352.454 kb on - strand, within Dshi_0368at 352.454 kb on - strand, within Dshi_0368at 352.509 kb on - strand, within Dshi_0368at 352.570 kb on + strand, within Dshi_0368at 352.653 kb on - strandat 352.674 kb on + strandat 352.706 kb on - strandat 352.833 kb on + strandat 352.833 kb on + strandat 352.835 kb on + strandat 352.849 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
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349,912 - -0.7
349,946 - Dshi_0366 0.13 -2.7
350,079 + Dshi_0366 0.36 -2.3
350,082 - Dshi_0366 0.37 -1.9
350,305 + Dshi_0366 0.76 -2.0
350,313 - Dshi_0366 0.77 -0.1
350,313 - Dshi_0366 0.77 +0.9
350,376 - Dshi_0366 0.88 -1.3
350,391 - -1.2
350,446 + -1.0
350,492 + -1.3
350,532 + +0.1
350,555 - -1.3
350,561 - -0.6
350,575 + -0.3
350,607 - +0.7
350,617 - +0.7
350,627 - +0.6
350,629 + +0.9
350,637 - +1.4
350,637 - +2.2
350,644 + +0.9
350,676 - +0.9
350,721 - +1.2
350,823 - Dshi_0367 0.13 +1.7
350,866 + Dshi_0367 0.17 +1.6
350,866 + Dshi_0367 0.17 -0.1
350,990 - Dshi_0367 0.26 +1.4
351,006 - Dshi_0367 0.27 +1.8
351,064 + Dshi_0367 0.32 +0.7
351,066 + Dshi_0367 0.32 +2.1
351,113 - Dshi_0367 0.36 +1.3
351,227 - Dshi_0367 0.44 +0.9
351,256 + Dshi_0367 0.47 +0.6
351,269 + Dshi_0367 0.48 +0.5
351,348 - Dshi_0367 0.54 +2.4
351,462 + Dshi_0367 0.62 +1.3
351,522 + Dshi_0367 0.67 +1.3
351,526 + Dshi_0367 0.67 +1.8
351,554 - Dshi_0367 0.69 +2.8
351,560 + Dshi_0367 0.70 +1.7
351,587 + Dshi_0367 0.72 +1.6
351,587 + Dshi_0367 0.72 +0.9
351,595 - Dshi_0367 0.72 +1.7
351,595 - Dshi_0367 0.72 +1.0
351,597 + Dshi_0367 0.73 +0.9
351,597 + Dshi_0367 0.73 +3.7
351,642 + Dshi_0367 0.76 +2.4
351,712 - Dshi_0367 0.81 +0.3
351,768 + Dshi_0367 0.86 +1.7
351,876 + +1.2
351,884 - +1.5
351,894 - +1.6
351,992 + +1.2
352,139 + Dshi_0368 0.25 +2.5
352,263 + Dshi_0368 0.41 +1.4
352,271 - Dshi_0368 0.42 +1.3
352,400 - Dshi_0368 0.59 +0.9
352,454 - Dshi_0368 0.66 +1.3
352,454 - Dshi_0368 0.66 +0.6
352,509 - Dshi_0368 0.74 +2.1
352,570 + Dshi_0368 0.82 +1.5
352,653 - +0.5
352,674 + -0.4
352,706 - -1.2
352,833 + -0.1
352,833 + +0.3
352,835 + +0.1
352,849 - +2.5

Or see this region's nucleotide sequence