Experiment: m.b. Chlorite 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0309 and Dshi_0310 are separated by 118 nucleotides Dshi_0310 and Dshi_0311 are separated by 342 nucleotides Dshi_0311 and Dshi_0312 are separated by 56 nucleotides Dshi_0312 and Dshi_0313 are separated by 179 nucleotides
Dshi_0309: Dshi_0309 - DNA-directed RNA polymerase, alpha subunit (RefSeq), at 298,455 to 299,486
_0309
Dshi_0310: Dshi_0310 - ribosomal protein L17 (RefSeq), at 299,605 to 300,021
_0310
Dshi_0311: Dshi_0311 - transcriptional regulator, LuxR family (RefSeq), at 300,364 to 300,975
_0311
Dshi_0312: Dshi_0312 - N-acyl-L-homoserine lactone synthetase-like protein (RefSeq), at 301,032 to 301,619
_0312
Dshi_0313: Dshi_0313 - AAA ATPase central domain protein (RefSeq), at 301,799 to 303,109
_0313
Position (kb)
300
301 Strain fitness (log2 ratio)
-1
0
1
2 at 300.171 kb on + strand at 300.173 kb on + strand at 300.238 kb on + strand at 300.336 kb on - strand at 300.368 kb on + strand at 300.388 kb on - strand at 300.445 kb on - strand, within Dshi_0311 at 300.463 kb on + strand, within Dshi_0311 at 300.484 kb on + strand, within Dshi_0311 at 300.490 kb on - strand, within Dshi_0311 at 300.511 kb on + strand, within Dshi_0311 at 300.516 kb on + strand, within Dshi_0311 at 300.516 kb on + strand, within Dshi_0311 at 300.518 kb on + strand, within Dshi_0311 at 300.536 kb on - strand, within Dshi_0311 at 300.630 kb on + strand, within Dshi_0311 at 300.638 kb on - strand, within Dshi_0311 at 300.649 kb on - strand, within Dshi_0311 at 300.657 kb on + strand, within Dshi_0311 at 300.669 kb on + strand, within Dshi_0311 at 300.714 kb on + strand, within Dshi_0311 at 300.722 kb on - strand, within Dshi_0311 at 300.804 kb on + strand, within Dshi_0311 at 300.915 kb on - strand at 300.965 kb on - strand at 300.977 kb on - strand at 300.978 kb on - strand at 301.022 kb on + strand at 301.112 kb on - strand, within Dshi_0312 at 301.137 kb on + strand, within Dshi_0312 at 301.182 kb on + strand, within Dshi_0312 at 301.220 kb on + strand, within Dshi_0312 at 301.239 kb on - strand, within Dshi_0312 at 301.323 kb on - strand, within Dshi_0312 at 301.436 kb on - strand, within Dshi_0312 at 301.453 kb on - strand, within Dshi_0312 at 301.479 kb on - strand, within Dshi_0312 at 301.604 kb on - strand at 301.604 kb on - strand at 301.636 kb on + strand at 301.636 kb on + strand at 301.777 kb on + strand at 301.808 kb on - strand at 301.884 kb on + strand at 301.903 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM remove 300,171 + -0.3 300,173 + +1.6 300,238 + +0.2 300,336 - +0.2 300,368 + +1.0 300,388 - +1.3 300,445 - Dshi_0311 0.13 +1.9 300,463 + Dshi_0311 0.16 +0.8 300,484 + Dshi_0311 0.20 +0.4 300,490 - Dshi_0311 0.21 +0.4 300,511 + Dshi_0311 0.24 +0.9 300,516 + Dshi_0311 0.25 +1.3 300,516 + Dshi_0311 0.25 +0.6 300,518 + Dshi_0311 0.25 -0.7 300,536 - Dshi_0311 0.28 -0.1 300,630 + Dshi_0311 0.43 -0.1 300,638 - Dshi_0311 0.45 +0.9 300,649 - Dshi_0311 0.47 +0.4 300,657 + Dshi_0311 0.48 -0.2 300,669 + Dshi_0311 0.50 +1.3 300,714 + Dshi_0311 0.57 +0.5 300,722 - Dshi_0311 0.58 +0.6 300,804 + Dshi_0311 0.72 -0.1 300,915 - +0.3 300,965 - -1.2 300,977 - +0.9 300,978 - -0.3 301,022 + -0.1 301,112 - Dshi_0312 0.14 +0.2 301,137 + Dshi_0312 0.18 -0.1 301,182 + Dshi_0312 0.26 +0.0 301,220 + Dshi_0312 0.32 +0.5 301,239 - Dshi_0312 0.35 +0.3 301,323 - Dshi_0312 0.49 +0.7 301,436 - Dshi_0312 0.69 +0.3 301,453 - Dshi_0312 0.72 +0.3 301,479 - Dshi_0312 0.76 +0.4 301,604 - +0.3 301,604 - +0.8 301,636 + -0.2 301,636 + +0.2 301,777 + -0.4 301,808 - +0.3 301,884 + -0.7 301,903 + +0.6
Or see this region's nucleotide sequence