Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0306

Experiment: m.b. Chlorite 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0305 and Dshi_0306 overlap by 4 nucleotidesDshi_0306 and Dshi_0307 are separated by 161 nucleotidesDshi_0307 and Dshi_0308 are separated by 15 nucleotides Dshi_0305: Dshi_0305 - preprotein translocase, SecY subunit (RefSeq), at 295,343 to 296,704 _0305 Dshi_0306: Dshi_0306 - adenylate kinase (RefSeq), at 296,701 to 297,342 _0306 Dshi_0307: Dshi_0307 - ribosomal protein S13 (RefSeq), at 297,504 to 297,947 _0307 Dshi_0308: Dshi_0308 - ribosomal protein S11 (RefSeq), at 297,963 to 298,352 _0308 Position (kb) 296 297 298Strain fitness (log2 ratio) -1 0 1at 296.971 kb on - strand, within Dshi_0306at 297.092 kb on + strand, within Dshi_0306at 297.290 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
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296,971 - Dshi_0306 0.42 -0.4
297,092 + Dshi_0306 0.61 -1.7
297,290 + -0.4

Or see this region's nucleotide sequence