Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0080

Experiment: m.b. Chlorite 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0079 and Dshi_0080 overlap by 4 nucleotidesDshi_0080 and Dshi_0081 are separated by 124 nucleotides Dshi_0079: Dshi_0079 - lipid A biosynthesis acyltransferase (RefSeq), at 78,091 to 78,972 _0079 Dshi_0080: Dshi_0080 - protein of unknown function DUF6 transmembrane (RefSeq), at 78,969 to 79,955 _0080 Dshi_0081: Dshi_0081 - 3-isopropylmalate dehydrogenase (RefSeq), at 80,080 to 81,186 _0081 Position (kb) 78 79 80Strain fitness (log2 ratio) -1 0 1at 78.014 kb on - strandat 78.081 kb on - strandat 79.457 kb on + strand, within Dshi_0080at 79.597 kb on + strand, within Dshi_0080at 79.665 kb on - strand, within Dshi_0080at 79.665 kb on - strand, within Dshi_0080at 79.915 kb on + strandat 79.917 kb on + strandat 80.044 kb on + strandat 80.596 kb on + strand, within Dshi_0081

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
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78,014 - +0.2
78,081 - +1.0
79,457 + Dshi_0080 0.49 +0.0
79,597 + Dshi_0080 0.64 -1.3
79,665 - Dshi_0080 0.71 -1.1
79,665 - Dshi_0080 0.71 -0.4
79,915 + -0.4
79,917 + +0.0
80,044 + +0.5
80,596 + Dshi_0081 0.47 +1.7

Or see this region's nucleotide sequence