Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0028

Experiment: m.b. Chlorite 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0027 and Dshi_0028 are separated by 7 nucleotidesDshi_0028 and Dshi_0029 are separated by 85 nucleotidesDshi_0029 and Dshi_0030 are separated by 11 nucleotides Dshi_0027: Dshi_0027 - Alkane 1-monooxygenase (RefSeq), at 30,653 to 31,807 _0027 Dshi_0028: Dshi_0028 - A/G-specific adenine glycosylase (RefSeq), at 31,815 to 32,909 _0028 Dshi_0029: Dshi_0029 - protein of unknown function DUF1159 (RefSeq), at 32,995 to 33,507 _0029 Dshi_0030: Dshi_0030 - thiol-disulfide oxidoreductase D, putative (RefSeq), at 33,519 to 34,190 _0030 Position (kb) 31 32 33Strain fitness (log2 ratio) -2 -1 0 1at 30.821 kb on + strand, within Dshi_0027at 30.836 kb on + strand, within Dshi_0027at 30.837 kb on + strand, within Dshi_0027at 30.857 kb on - strand, within Dshi_0027at 30.920 kb on + strand, within Dshi_0027at 30.982 kb on - strand, within Dshi_0027at 30.982 kb on - strand, within Dshi_0027at 31.019 kb on - strand, within Dshi_0027at 31.102 kb on - strand, within Dshi_0027at 31.145 kb on + strand, within Dshi_0027at 31.192 kb on + strand, within Dshi_0027at 31.197 kb on + strand, within Dshi_0027at 31.234 kb on + strand, within Dshi_0027at 31.308 kb on + strand, within Dshi_0027at 31.335 kb on + strand, within Dshi_0027at 31.343 kb on - strand, within Dshi_0027at 31.350 kb on + strand, within Dshi_0027at 31.377 kb on - strand, within Dshi_0027at 31.611 kb on + strand, within Dshi_0027at 31.803 kb on + strandat 31.847 kb on - strandat 31.868 kb on - strandat 31.868 kb on - strandat 31.959 kb on + strand, within Dshi_0028at 32.097 kb on + strand, within Dshi_0028at 32.166 kb on - strand, within Dshi_0028at 32.166 kb on - strand, within Dshi_0028at 32.249 kb on + strand, within Dshi_0028at 32.376 kb on - strand, within Dshi_0028at 32.520 kb on - strand, within Dshi_0028at 32.629 kb on + strand, within Dshi_0028at 32.678 kb on + strand, within Dshi_0028at 32.949 kb on + strandat 32.956 kb on + strandat 32.961 kb on + strandat 33.586 kb on - strandat 33.601 kb on - strand, within Dshi_0030at 33.717 kb on + strand, within Dshi_0030at 33.759 kb on - strand, within Dshi_0030at 33.853 kb on + strand, within Dshi_0030at 33.854 kb on + strand, within Dshi_0030at 33.863 kb on - strand, within Dshi_0030

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
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30,821 + Dshi_0027 0.15 +0.6
30,836 + Dshi_0027 0.16 -0.1
30,837 + Dshi_0027 0.16 +1.5
30,857 - Dshi_0027 0.18 +1.4
30,920 + Dshi_0027 0.23 -2.7
30,982 - Dshi_0027 0.28 +0.2
30,982 - Dshi_0027 0.28 +0.5
31,019 - Dshi_0027 0.32 -0.7
31,102 - Dshi_0027 0.39 +0.2
31,145 + Dshi_0027 0.43 +0.6
31,192 + Dshi_0027 0.47 +0.9
31,197 + Dshi_0027 0.47 +0.3
31,234 + Dshi_0027 0.50 -0.1
31,308 + Dshi_0027 0.57 -0.1
31,335 + Dshi_0027 0.59 +0.4
31,343 - Dshi_0027 0.60 +0.9
31,350 + Dshi_0027 0.60 -0.9
31,377 - Dshi_0027 0.63 +0.3
31,611 + Dshi_0027 0.83 -0.5
31,803 + +0.4
31,847 - -0.2
31,868 - +0.6
31,868 - -0.2
31,959 + Dshi_0028 0.13 +0.2
32,097 + Dshi_0028 0.26 -0.7
32,166 - Dshi_0028 0.32 -1.3
32,166 - Dshi_0028 0.32 -0.9
32,249 + Dshi_0028 0.40 +0.8
32,376 - Dshi_0028 0.51 -0.1
32,520 - Dshi_0028 0.64 -1.1
32,629 + Dshi_0028 0.74 -0.8
32,678 + Dshi_0028 0.79 -1.7
32,949 + +0.0
32,956 + -0.9
32,961 + +1.4
33,586 - +0.3
33,601 - Dshi_0030 0.12 -0.7
33,717 + Dshi_0030 0.29 +0.1
33,759 - Dshi_0030 0.36 +0.1
33,853 + Dshi_0030 0.50 -0.1
33,854 + Dshi_0030 0.50 -1.1
33,863 - Dshi_0030 0.51 -0.6

Or see this region's nucleotide sequence