Experiment: m.b. Chlorite 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0027 and Dshi_0028 are separated by 7 nucleotides Dshi_0028 and Dshi_0029 are separated by 85 nucleotides Dshi_0029 and Dshi_0030 are separated by 11 nucleotides
Dshi_0027: Dshi_0027 - Alkane 1-monooxygenase (RefSeq), at 30,653 to 31,807
_0027
Dshi_0028: Dshi_0028 - A/G-specific adenine glycosylase (RefSeq), at 31,815 to 32,909
_0028
Dshi_0029: Dshi_0029 - protein of unknown function DUF1159 (RefSeq), at 32,995 to 33,507
_0029
Dshi_0030: Dshi_0030 - thiol-disulfide oxidoreductase D, putative (RefSeq), at 33,519 to 34,190
_0030
Position (kb)
31
32
33 Strain fitness (log2 ratio)
-2
-1
0
1 at 30.821 kb on + strand, within Dshi_0027 at 30.836 kb on + strand, within Dshi_0027 at 30.837 kb on + strand, within Dshi_0027 at 30.857 kb on - strand, within Dshi_0027 at 30.920 kb on + strand, within Dshi_0027 at 30.982 kb on - strand, within Dshi_0027 at 30.982 kb on - strand, within Dshi_0027 at 31.019 kb on - strand, within Dshi_0027 at 31.102 kb on - strand, within Dshi_0027 at 31.145 kb on + strand, within Dshi_0027 at 31.192 kb on + strand, within Dshi_0027 at 31.197 kb on + strand, within Dshi_0027 at 31.234 kb on + strand, within Dshi_0027 at 31.308 kb on + strand, within Dshi_0027 at 31.335 kb on + strand, within Dshi_0027 at 31.343 kb on - strand, within Dshi_0027 at 31.350 kb on + strand, within Dshi_0027 at 31.377 kb on - strand, within Dshi_0027 at 31.611 kb on + strand, within Dshi_0027 at 31.803 kb on + strand at 31.847 kb on - strand at 31.868 kb on - strand at 31.868 kb on - strand at 31.959 kb on + strand, within Dshi_0028 at 32.097 kb on + strand, within Dshi_0028 at 32.166 kb on - strand, within Dshi_0028 at 32.166 kb on - strand, within Dshi_0028 at 32.249 kb on + strand, within Dshi_0028 at 32.376 kb on - strand, within Dshi_0028 at 32.520 kb on - strand, within Dshi_0028 at 32.629 kb on + strand, within Dshi_0028 at 32.678 kb on + strand, within Dshi_0028 at 32.949 kb on + strand at 32.956 kb on + strand at 32.961 kb on + strand at 33.586 kb on - strand at 33.601 kb on - strand, within Dshi_0030 at 33.717 kb on + strand, within Dshi_0030 at 33.759 kb on - strand, within Dshi_0030 at 33.853 kb on + strand, within Dshi_0030 at 33.854 kb on + strand, within Dshi_0030 at 33.863 kb on - strand, within Dshi_0030
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM remove 30,821 + Dshi_0027 0.15 +0.6 30,836 + Dshi_0027 0.16 -0.1 30,837 + Dshi_0027 0.16 +1.5 30,857 - Dshi_0027 0.18 +1.4 30,920 + Dshi_0027 0.23 -2.7 30,982 - Dshi_0027 0.28 +0.2 30,982 - Dshi_0027 0.28 +0.5 31,019 - Dshi_0027 0.32 -0.7 31,102 - Dshi_0027 0.39 +0.2 31,145 + Dshi_0027 0.43 +0.6 31,192 + Dshi_0027 0.47 +0.9 31,197 + Dshi_0027 0.47 +0.3 31,234 + Dshi_0027 0.50 -0.1 31,308 + Dshi_0027 0.57 -0.1 31,335 + Dshi_0027 0.59 +0.4 31,343 - Dshi_0027 0.60 +0.9 31,350 + Dshi_0027 0.60 -0.9 31,377 - Dshi_0027 0.63 +0.3 31,611 + Dshi_0027 0.83 -0.5 31,803 + +0.4 31,847 - -0.2 31,868 - +0.6 31,868 - -0.2 31,959 + Dshi_0028 0.13 +0.2 32,097 + Dshi_0028 0.26 -0.7 32,166 - Dshi_0028 0.32 -1.3 32,166 - Dshi_0028 0.32 -0.9 32,249 + Dshi_0028 0.40 +0.8 32,376 - Dshi_0028 0.51 -0.1 32,520 - Dshi_0028 0.64 -1.1 32,629 + Dshi_0028 0.74 -0.8 32,678 + Dshi_0028 0.79 -1.7 32,949 + +0.0 32,956 + -0.9 32,961 + +1.4 33,586 - +0.3 33,601 - Dshi_0030 0.12 -0.7 33,717 + Dshi_0030 0.29 +0.1 33,759 - Dshi_0030 0.36 +0.1 33,853 + Dshi_0030 0.50 -0.1 33,854 + Dshi_0030 0.50 -1.1 33,863 - Dshi_0030 0.51 -0.6
Or see this region's nucleotide sequence